New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2954393	46 (0.760)	4 (0.070)	4/252	NT	8.1%	coding (105/1383 nt)	PP_2586	putative amino acid transporter
	?	NC_002947	= 2954428	47 (0.830)					coding (70/1383 nt)	PP_2586	putative amino acid transporter

CGAGCGTGAGCAGGTAGGCGGTGGGCAGGTGCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAG  >  NC_002947/2954284‑2954570                                                                                                                                                 |                                                                                                                                               cgAGCGTGAGCAGGTAGGCGGTGGGCAGGTGCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCggtg                                                                                                                                            >  6:248916‑M2/1‑145 (MQ=255)       tGAGCAGGTAGGCGGTGGGCAGGTGCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTg                                                                                                                                      >  3:189069/1‑149 (MQ=255)           cAGGTAGGCGGTGGGCAGGTGCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCgg                                                                                                                                  >  3:106451/1‑149 (MQ=255)            aGGTAGGCGGTGGGCAGGTGCCCTTTGGTCATCTGGGTGACCAGCGCGTAGGTGGTGAATACCGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACATGCGGAAGCGGCCGGTGCTGGTGCCggg                                                                                                                                 <  1:211986/149‑1 (MQ=255)               tAGGCGGTGGGCAGGTGCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACACCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTg                                                                                                                              <  6:73920/149‑1 (MQ=255)                   cGGTGGGCAGGTGCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAg                                                                                                                          <  8:91644/149‑1 (MQ=255)                     gTGGGCAGGTGCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAggg                                                                                                                        <  4:189069/149‑1 (MQ=255)                             gTGCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATgcg                                                                                                                >  1:136216/1‑149 (MQ=255)                             gTGCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATgcg                                                                                                                >  7:116173/1‑149 (MQ=255)                              tGCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATgcgg                                                                                                               <  6:366502/149‑1 (MQ=255)                              tGCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATgcgg                                                                                                               >  5:238986/1‑149 (MQ=255)                               gCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATgcggg                                                                                                              >  1:103666/1‑149 (MQ=255)                                     tGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATgcggggcggg                                                                                                         <  2:103666/148‑1 (MQ=255)                                      ggTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGcggggcgggg                                                                                                        <  8:16499/148‑1 (MQ=255)                                      ggTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGcggggcgggg                                                                                                        <  2:136216/148‑1 (MQ=255)                                      ggTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGcggggcgggg                                                                                                        <  4:106451/148‑1 (MQ=255)                                       gTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCggggcggggc                                                                                                       >  4:312308/1‑148 (MQ=255)                                         cATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTAt                                                                                                    >  3:168650/1‑149 (MQ=255)                                                gTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCAGGGACTAGCGGAAGCGGCCGGTGCTGGTGCCGCGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGcag                                                                                              >  2:297543/1‑146 (MQ=255)                                                      aGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCGAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTa                                                                                            <  8:199051/144‑1 (MQ=255)                                                      aGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTa                                                                                            >  7:199051/1‑144 (MQ=255)                                                       gCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACttgtt                                                                                      <  2:341199/149‑1 (MQ=255)                                                       gCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACttgtt                                                                                      <  7:173217/149‑1 (MQ=255)                                                          cGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACttgttgtt                                                                                   <  8:116173/149‑1 (MQ=255)                                                          cGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACttgttgtt                                                                                   >  6:317080/1‑149 (MQ=255)                                                            tAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCGAGGCCAAAGAGCACCAGGGCGGTCATGCTCATGGACTTGCGTTTGCTGCCGGTTCTGGTGCCGGGTTGCGAGGGTGCATGGGGGGCGGGGCTATGGGCTGTACTttttgttgt                                                                                 <  7:281817/149‑1 (MQ=255)                                                                tggtgAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTAt                                                                               >  8:158373/1‑147 (MQ=255)                                                                tggtgAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTAt                                                                               <  7:158373/147‑1 (MQ=255)                                                                    gAATACGGACAGGGGAACCATTTAGGCCAGTCCAAACAGAAAAAGGGCGGTCATGATAATTGACTTGCGGAAGCTGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTATGCATTg                                                                         >  3:172097/1‑149 (MQ=255)                                                                     atttcgtccAGGGGCACCATGTTGGCCAGGCAAAACAGCACCTGGGCGGTCATGCTCATGGAGTTGCGGTAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGGGGGGCGGGGCTATGGGCTGTAGTTGTTGTTGTTTGCATTg                                                                         <  2:186740/141‑1 (MQ=255)                                                                      aTACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTATGCATTGCt                                                                       <  6:238986/149‑1 (MQ=255)                                                                                  gCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGGATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGaaaa                                                           <  6:312652/149‑1 (MQ=255)                                                                                  gCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGaaaa                                                           <  3:312308/149‑1 (MQ=255)                                                                                  gCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGaa                                                             >  5:119319/1‑147 (MQ=255)                                                                                        tGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATg                                                     >  1:333327/1‑149 (MQ=255)                                                                                          tAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCa                                                   <  2:278148/149‑1 (MQ=255)                                                                                                  gccaCACAGCCCCAGGGCGGTCATGCGCCTGGACTTGCGGAAGCGGCCGGGGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACcg                                           <  4:172097/149‑1 (MQ=255)                                                                                                   ccaAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACcgc                                          >  8:47683/1‑149 (MQ=255)                                                                                                    caAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCggtgctgtttggcctggcctacatggtgccccttgccgtaatcaccacctacgggctggtcacccagatgaccaaagggcacctgcccaccccctacctgct                                          <  5:5212‑M2/148‑103 (MQ=255)                                                                                                    caAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACcgcg                                         >  2:363088/1‑149 (MQ=255)                                                                                                     aaaCAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCggtgctgtttggcctggcctacatggtgcccctggccgtattcaccacctacgggctggtcacccagatgaccaaagggcacctgcccaccgcctacctgctca                                        <  3:218965‑M2/149‑105 (MQ=255)                                                                                                      aaCACCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCggtgctgtttggcctggcatacatgttgcccctggcagtattcaccacctacgggctggtcacccagatgaccaaaggccaccagcccacagcctccctgctcac                                       <  4:132039‑M2/149‑106 (MQ=255)                                                                                                                           cTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGTGGCAGGCGAGCAGGCTCGCGAcc                   <  7:56073/148‑1 (MQ=255)                                                                                                                            tCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTc                         <  8:334353/141‑1 (MQ=255)                                                                                                                            tCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTc                         >  7:334353/1‑141 (MQ=255)                                                                                                                            tCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGt                 >  2:294813/1‑149 (MQ=255)                                                                                                                            tCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGt                 >  3:63347/1‑149 (MQ=255)                                                                                                                              aTGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGt                 >  1:139202/1‑147 (MQ=255)                                                                                                                                 gACTTGCGGAAGCGGCCggtgctgtttggcctggcctacatggtgcccctggccgtattcaccacctacgggctggtcacccagatgaccaaagggcacctgcccaccgcctacctgctcacgctcgccgccatgctgctgaccgcct             >  4:218965‑M2/1‑17 (MQ=255)                                                                                                                                       cGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTtgtg      >  7:270026/1‑149 (MQ=255)                                                                                                                                         gAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGc     >  7:268603/1‑148 (MQ=255)                                                                                                                                           aGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAag  <  4:63347/149‑1 (MQ=255)                                                                                                                                           aGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAag  <  5:317080/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                               CGAGCGTGAGCAGGTAGGCGGTGGGCAGGTGCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAG  >  NC_002947/2954284‑2954570

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.