New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3542080	44 (0.730)	3 (0.050)	3/254	NT	6.3%	coding (643/966 nt)	galE	UDP‑glucose 4‑epimerase
	?	NC_002947	= 3542109	47 (0.820)					coding (614/966 nt)	galE	UDP‑glucose 4‑epimerase

CCGGGCCGTATCGATCACCTGCTGCACCGAAAAGCCCAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATGGGTTTCCGGCTCGTGACGCTCGCCTAGCTGGCCTTCCGGGTCAGCGCCCGCT  >  NC_002947/3541940‑3542228                                                                                                                                             |                                                                                                                                                     ccGGGCCGTATCGATCACCTGCTGCACCGAAAAGCCCAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAgg                                                                                                                                              >  3:14107/1‑149 (MQ=255)   gggTCGTATCGATCACCTGCTGCACCGAAAAGCCCAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTg                                                                                                                                            <  8:340148/149‑1 (MQ=255)           tCGATCACCTGCTGCACCGAAAAGCCCAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCg                                                                                                                                     <  3:174959/148‑1 (MQ=255)             gATCACCTGCTGCACCGAAAAGCCCAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGc                                                                                                                                   <  5:205416/148‑1 (MQ=255)             gATCACCTGCTGCACCGAAAAGCCCAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCg                                                                                                                                  >  4:263311/1‑149 (MQ=255)              aTCACCTGCTGCACCGAAAAGCCCAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCgt                                                                                                                                 >  1:179008/1‑149 (MQ=255)                       tGCACCGAAAAGCCCAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTc                                                                                                                        <  4:341219‑M2/149‑2 (MQ=255)                         cACCGAAAAGCCCAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTc                                                                                                                        >  2:193974‑M2/1‑146 (MQ=255)                          aCCGAAAAGCCCAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTcgc                                                                                                                      <  7:120868‑M2/148‑4 (MQ=255)                              aaaaGCCCAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGAcc                                                                                                                  >  3:56678/1‑148 (MQ=255)                               aaaGCCCAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGactacgacacgccggatggcacctgcatacgcgactac                                                                                                                <  2:234970‑M1/149‑39 (MQ=255)                                  ccgctctccattgcccCGCGGGCACGCGGCACGCTCGCCACCGTCCAGTAGATACTCCACTGCCAGTGCATGGGCAGCCGCCAGGTCAGCCACATGCACGTAGTCGCGactacgacacgccggatggcacctgcatacgcgactacgtg                                                                                                             <  8:241152‑M1/142‑42 (MQ=255)                                   cccAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAacac                                                                                                            >  6:34063/1‑149 (MQ=255)                                     cAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTg                                                                                                          <  4:14107/149‑1 (MQ=255)                                      aGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGt                                                                                                         >  7:27494/1‑149 (MQ=255)                                        gCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACAGTCa                                                                                                       >  8:246602/1‑149 (MQ=255)                                          cATTGCCCAGGTTGAACGCGGCACGCTCGCCCCCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTCCCACATGCACGTAGTCGCGactacgacacgccggatggcccctgcctacgcgactacgtg                                                                                                             >  7:241152‑M1/1‑100 (MQ=255)                                               cccAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGc                                                                                                                                   >  3:4457/1‑114 (MQ=255)                                               cccAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGc                                                                                                                                   <  4:4457/114‑1 (MQ=255)                                                ccAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTcg                                                                                               >  6:66588/1‑149 (MQ=255)                                                    agtGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCTTCGCGcc                                                                                           <  1:133377/147‑1 (MQ=255)                                                     ttGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCg                                                                                          <  4:205580/149‑1 (MQ=255)                                                       gAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCgg                                                                                         <  3:263311/148‑1 (MQ=255)                                                          cgcgGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAg                                                                                     <  7:246602/149‑1 (MQ=255)                                                               cACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCa                                                                                <  8:27494/149‑1 (MQ=255)                                                                aCGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAg                                                                               >  5:77764/1‑149 (MQ=255)                                                                 cGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGc                                                                              <  8:1946/149‑1 (MQ=255)                                                                     cGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCGCATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTg                                                                           >  1:335008/1‑148 (MQ=255)                                                                      gCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTg                                                                           >  7:18534/1‑147 (MQ=255)                                                                      gCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCa                                                                         <  5:34063/149‑1 (MQ=255)                                                                      gCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCAGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTg                                                                           >  7:301298/1‑147 (MQ=255)                                                                       ccACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAg                                                                        <  4:56678/149‑1 (MQ=255)                                                                           cGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGAt                                                                     >  4:183390/1‑148 (MQ=255)                                                                                     aTAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCa                                                          <  2:179008/149‑1 (MQ=255)                                                                                        aTCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGAt                                                       >  1:156486/1‑149 (MQ=255)                                                                                        aTCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGAt                                                       >  6:254790/1‑149 (MQ=255)                                                                                         tCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATg                                                      >  2:245052/1‑149 (MQ=255)                                                                                              tGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATg                                                      <  2:240143/144‑1 (MQ=255)                                                                                              tGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACAAGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATggagct                                                 >  1:240143/1‑145 (MQ=255)                                                                                                  aGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATGGGTTTCCgg                                             <  3:166509/149‑1 (MQ=255)                                                                                                   gTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATg                                                      <  4:164851/139‑1 (MQ=255)                                                                                                   gTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATg                                                      >  3:164851/1‑139 (MQ=255)                                                                                                       aTGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATGGGTTTCCGGCTCGt                                        <  8:120868/149‑1 (MQ=255)                                                                                                                cgccAGGTCTGCCGCATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATGGGTTTCCGGCTCGTGACGCTCGc                               <  2:335008/149‑1 (MQ=255)                                                                                                                      gTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATGGGTTTCCGGCTCGTGACGCTCGCCTAGCt                         <  6:77764/149‑1 (MQ=255)                                                                                                                       tCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGCCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATGGGTTTCCGGCTCGTGACGCTCGTCTAGCTg                        <  8:327523/149‑1 (MQ=255)                                                                                                                         tGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATGGGTTTCCGGCTCGTGACGCTCGCCTAGCTGGc                      >  7:268144/1‑149 (MQ=255)                                                                                                                           ccACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATGGGTTTCCGGCTCGTGACGCTCGCCTAGCTgg                       <  3:341219/146‑1 (MQ=255)                                                                                                                                tGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATGGGTTTCCGGCTCGTGACGCTCGCCTAGCTGGCCTTCCgg               <  5:254790/149‑1 (MQ=255)                                                                                                                                  cACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTcgcgactacgtgcatgtggctgacctggcggctgcccatgcactggcagtggagtatctactggacggtggcgagcgtgccgcgtgcccgcggggcaatggagagcgg             <  8:241152‑M2/149‑109 (MQ=255)                                                                                                                                  cACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATGGGTTTCCGGCTCGTGACGCTCGCCTAGCTGGCCTTCCGGGt             <  1:245052/149‑1 (MQ=255)                                                                                                                                  cACGTAGTCGCGTAGGCAGGGGCCATCCGGCGTGTCGTAGTcgcgactacgtgcatgtgggagacctggcggctgcccatgcactggcagtggattatctactggacgggggcgagcgtgccgcgttcaacctgggcaatg                     >  7:241152‑M2/1‑41 (MQ=255)                                                                                                                                     gTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTcgcgactacgtgcatgtggcagacctggcggctgcccatgcactggcagtggattatctactggacggtggcgagcgtgccgcgttcaacctgggcaatggcctgggcttt          <  2:234970‑M2/149‑112 (MQ=255)                                                                                                                                           gcgactacgacacgccggatggcacctgcatacgcgactacgtgcatgtggcagacctggcggctgcccatgcactggcagtggattatctactggacggtggcgagcgtgccgcgttcaacctgggcaatggcctgggcttttcggt     <  7:120868‑M1/148‑146 (MQ=255)                                                                                                                                             gactacgacacgccggatggcacctgcatacgcgactacgtgcatgtggcagacctggcggctgcccatgcactggcagtggattatctactggacggtggcgagcgtgccgcgttcaacctgggcaatggcctgggcttttcggtgca  <  4:341219‑M1/149‑149 (MQ=255)                                                                                                                                             gactacgacacgccggatggcacctgcatacgcgactacgtgcatgtggcagacctggcggctgcccatgcactggcagtggattatctactggacggtggcgagcgtgccgcgttcaacctgggcaatggcctgggcttttcggtg    >  2:193974‑M1/1‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                     CCGGGCCGTATCGATCACCTGCTGCACCGAAAAGCCCAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATGGGTTTCCGGCTCGTGACGCTCGCCTAGCTGGCCTTCCGGGTCAGCGCCCGCT  >  NC_002947/3541940‑3542228

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.