New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3542080 | 44 (0.730) | 3 (0.050) | 3/254 | NT | 6.3% | coding (643/966 nt) | galE | UDP‑glucose 4‑epimerase |
? | NC_002947 | = 3542109 | 47 (0.820) | coding (614/966 nt) | galE | UDP‑glucose 4‑epimerase |
TGCACCGAAAAGCCCAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATGGGTTTCCGGCTCGTGACGCTCGCCTAGCTGGCCTTCCGGGTCAGCGCCCGCTGCATTGAAATAGCGCAGGCTTACCGACTT > NC_002947/3541962‑3542257 | tGCACCGAAAAGCCCAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTc < 4:341219‑M2/149‑2 (MQ=255) cACCGAAAAGCCCAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTc > 2:193974‑M2/1‑146 (MQ=255) aCCGAAAAGCCCAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTcgc < 7:120868‑M2/148‑4 (MQ=255) aaaaGCCCAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGAcc > 3:56678/1‑148 (MQ=255) cccAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAacac > 6:34063/1‑149 (MQ=255) cAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTg < 4:14107/149‑1 (MQ=255) aGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGt > 7:27494/1‑149 (MQ=255) gCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACAGTCa > 8:246602/1‑149 (MQ=255) ccAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTcg > 6:66588/1‑149 (MQ=255) agtGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCTTCGCGcc < 1:133377/147‑1 (MQ=255) ttGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCg < 4:205580/149‑1 (MQ=255) gAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCgg < 3:263311/148‑1 (MQ=255) cgcgGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAg < 7:246602/149‑1 (MQ=255) cACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCa < 8:27494/149‑1 (MQ=255) aCGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAg > 5:77764/1‑149 (MQ=255) cGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGc < 8:1946/149‑1 (MQ=255) cGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCGCATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTg > 1:335008/1‑148 (MQ=255) gCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTg > 7:18534/1‑147 (MQ=255) gCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCa < 5:34063/149‑1 (MQ=255) gCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCAGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTg > 7:301298/1‑147 (MQ=255) ccACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAg < 4:56678/149‑1 (MQ=255) cGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGAt > 4:183390/1‑148 (MQ=255) aTAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCa < 2:179008/149‑1 (MQ=255) aTCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGAt > 6:254790/1‑149 (MQ=255) aTCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGAt > 1:156486/1‑149 (MQ=255) tCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATg > 2:245052/1‑149 (MQ=255) tGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATg < 2:240143/144‑1 (MQ=255) tGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACAAGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATggagct > 1:240143/1‑145 (MQ=255) aGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATGGGTTTCCgg < 3:166509/149‑1 (MQ=255) gTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATg < 4:164851/139‑1 (MQ=255) gTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATg > 3:164851/1‑139 (MQ=255) aTGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATGGGTTTCCGGCTCGt < 8:120868/149‑1 (MQ=255) cgccAGGTCTGCCGCATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATGGGTTTCCGGCTCGTGACGCTCGc < 2:335008/149‑1 (MQ=255) gTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATGGGTTTCCGGCTCGTGACGCTCGCCTAGCt < 6:77764/149‑1 (MQ=255) tCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGCCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATGGGTTTCCGGCTCGTGACGCTCGTCTAGCTg < 8:327523/149‑1 (MQ=255) tGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATGGGTTTCCGGCTCGTGACGCTCGCCTAGCTGGc > 7:268144/1‑149 (MQ=255) ccACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATGGGTTTCCGGCTCGTGACGCTCGCCTAGCTgg < 3:341219/146‑1 (MQ=255) tGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATGGGTTTCCGGCTCGTGACGCTCGCCTAGCTGGCCTTCCgg < 5:254790/149‑1 (MQ=255) cACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTcgcgactacgtgcatgtggctgacctggcggctgcccatgcactggcagtggagtatctactggacggtggcgagcgtgccgcgtgcccgcggggcaatggagagcgg < 8:241152‑M2/149‑109 (MQ=255) cACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATGGGTTTCCGGCTCGTGACGCTCGCCTAGCTGGCCTTCCGGGt < 1:245052/149‑1 (MQ=255) cACGTAGTCGCGTAGGCAGGGGCCATCCGGCGTGTCGTAGTcgcgactacgtgcatgtgggagacctggcggctgcccatgcactggcagtggattatctactggacgggggcgagcgtgccgcgttcaacctgggcaatg > 7:241152‑M2/1‑41 (MQ=255) gTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTcgcgactacgtgcatgtggcagacctggcggctgcccatgcactggcagtggattatctactggacggtggcgagcgtgccgcgttcaacctgggcaatggcctgggcttt < 2:234970‑M2/149‑112 (MQ=255) aTGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATc < 2:187654/81‑1 (MQ=255) aTGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATc > 1:187654/1‑81 (MQ=255) tGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATGGGTTTCCGGCTCGTGACGCTCGCCTAGCTGGCCTTCCGGGt > 2:306771/1‑135 (MQ=255) tGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATGGGTTTCCGGCTCGTGACGCTCGCCTAGCTGGCCTTCCGGGt < 1:306771/135‑1 (MQ=255) tGCAGGTGCCATCAGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATGGGTTTCCGGCTCGTGACGCTCGCCTAGCTGGCCTTCCGGGTCAGCGCCCGCTGCa < 8:301298/149‑1 (MQ=255) gCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATGGGTTTCCGGCTCGTGACGCTCGCCTAGCTGGCCTTCCGGGTCAGCGCCCGCTGCAt > 4:137896/1‑149 (MQ=255) gCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATGGGTTTCCGGCTCGTGACGCTCGCCTAGCTGGCCTTCCGGGTCAGCGCCCGCTGCAt > 8:216880/1‑149 (MQ=255) gTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATGGGTTTCCGGCTCGTGACGCTCGCCTAGCTGGCCTTCCGGGTCAGCGCCCGCTGCATTGa > 3:351675/1‑148 (MQ=255) tCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATGGGTTTCCGGCTCGTGACGCTCGCCTAGCTGGCCTTCCGGGTCAGCGCCCGCTGCATTGAAATa < 8:51422/146‑1 (MQ=255) tCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATGGGTTTCCGGCTCGTGACGCTCGCCTAGCTGGCCTTCCGGGTCAGCGCCCGCTGCATTGAAATa > 7:51422/1‑146 (MQ=255) ggCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATGGGTTTCCGGCTCGTGACGCTCGCCTAGCTGGCCTTCCGGGTCAGCGCCCGCTGCATTGAAATAGCGCAg < 2:156486/149‑1 (MQ=255) cGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATGGGTTTCCGGCTCGTGACGCTCGCCTAGCTGGCCTTCCGGGTCAGCGCCCGCTGCATTGAAATAGCGCAGGCTTAcc > 4:159878/1‑149 (MQ=255) tCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATGGGTTTCCGGCTCGTGACGCTCGCCTAGCTGGCCTTCCGGGTCAGCGCCCGCTGCATTGAAATAGCGCAGGCTTACCGACtt > 8:15600/1‑149 (MQ=255) | TGCACCGAAAAGCCCAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGGGCAGCCGCCAGGTCTGCCACATGCACGTAGTCGCGTATGCAGGTGCCATCCGGCGTGTCGTAGTCGCGACCAAACACTGTCACCGCCTCGCGCCGGCCAGATGCAGCCTGCAGGATCAACGGGATCAGATGGGTTTCCGGCTCGTGACGCTCGCCTAGCTGGCCTTCCGGGTCAGCGCCCGCTGCATTGAAATAGCGCAGGCTTACCGACTT > NC_002947/3541962‑3542257 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |