New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3847156 =	41 (0.680)	3 (0.050)	3/256	NT	7.4%	coding (246/1329 nt)	PP_3396	hypothetical protein
	?	NC_002947	3847197 =	36 (0.620)					coding (287/1329 nt)	PP_3396	hypothetical protein

ACGTCCCAGCCAATGGCGGCTTCCCCGCCTGGTACCAGGACAGCCACGGTCGTACCCTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGCGATCGAAGCGGCATTCGCTGCC  >  NC_002947/3847011‑3847303                                                                                                                                                  |                                                                                                                                                    cgggcgaagctgacctggtcaccctcgacaggttcttcggcagcgaatgccgcttcgatcgccgtgccatagctgaggtcgatgccacgcgcagcgtcgacgattgcagcgtcggcagtgaaccagaacgcttcgtcagggaagtTGgt                                                                                                                                                  >  4:109981‑M1/146‑149 (MQ=255)  cGTCCCAGCCAATGGCGGCTTCCCCGCCTGGTACCAGGACAGCCACGGTCGTACCCTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGgt                                                                                                                                                  <  5:290836/148‑1 (MQ=255)  cGTCCCAGCCAATGGCGGCTTCCCCGCCTGGTACCAGGACAGCCACGGTCGTACCCTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGgt                                                                                                                                                  <  1:46544/148‑1 (MQ=255)  cGTCCCAGCCAATGGCGGCTTCCCCGCCTGGTACCAGGACAGCCACGGTCGTACCCTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGgt                                                                                                                                                  <  7:210657/148‑1 (MQ=255)  cGTCCCAGCCAATGGCGGCTTCCCCGCCTGGTACCAGGACAGCCACGGTCGTACCCTCGACCTGCGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGgt                                                                                                                                                  <  6:28425/148‑1 (MQ=255)    tCCCAGCCAATGGCGGCTTCCCCGCCTGGTACCAGGACAGCCACGGTCGTACCCTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGgtgtg                                                                                                                                               >  8:291522/1‑149 (MQ=255)      ccAGCCAATGGCGGCTTCCCCGCCTGGTACCAGGACAGCCACGGTCGTACCCTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGtt                                                                                                                                             >  3:172626/1‑149 (MQ=255)      ccAGCCAATGGCGGCTTCCCCGCCTGGTACCAGGACAGCCACGGTCGTACCCTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGtt                                                                                                                                             >  5:212011/1‑149 (MQ=255)      ccAGCCAATGGCGGCTTCCCCGCCTGGTACCAGGACAGCCACGGTCGTACCCTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGtt                                                                                                                                             <  7:291522/149‑1 (MQ=255)      ccAGCCAATGGCGGCTTCCCCGCCTGGTACCAGGACAGCCACGGTCGTACCCTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACACTAATACATGTACACGCTACTGCCCACACCTGgtgtgt                                                                                                                                              >  2:81023/1‑148 (MQ=255)       cAGCCAATGGCGGCTTCCCCGCCTGGTACCAGGACAGCCACGGTCGTACCCTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTc                                                                                                                                            >  3:92648/1‑149 (MQ=255)        aGCCAATGGCGGCTTCCCCGCCTGGTACCAGGACAGCCACGGTCGTACCCTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTcg                                                                                                                                           >  2:271802/1‑149 (MQ=255)                        cccGCCTGGTACCAGGACAGCCACGGTCGTACCCTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATacccaaccca                                                                                                                            <  4:135172/148‑1 (MQ=255)                        cccGCCTGGTACCAGGACAGCCACGGTCGTACCCTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCAt                                                                                                                           >  3:72175/1‑149 (MQ=255)                         ccGGCTGGTACCAGGACAGCCACGGTCGTACCCTCGACCTGTGCCTGACCAAGGCCGTCAGCTGCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCAGACCTGGTGTGTTCTACGATACCCAACCCATc                                                                                                                          <  5:258979/149‑1 (MQ=255)                         ccGCCTGGTACCAGGACAGCCACGGTCGTACCCTCGCCCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATc                                                                                                                          <  5:356827/149‑1 (MQ=255)                         ccGCCTGGTACCAGGACAGCCACGGTCGTACCCTCGACCTGTGCCTGACCAAGGCGTGCAGTTGCAACGAGTCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATc                                                                                                                          <  1:308509/149‑1 (MQ=255)                         ccGCCTGGTACCAGGACAGCCACGGTCGTACCCTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATc                                                                                                                          <  7:153692/149‑1 (MQ=255)                           gCCTGGTACCAGGACAGCCACGGTCGTACCCTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGt                                                                                                                        <  7:4327/149‑1 (MQ=255)                            ccTGGTACCAGGACAGCCACGGTCGTACCCTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGGCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTc                                                                                                                       <  3:65094/149‑1 (MQ=255)                               ggTACCAGGACAGCCACGGTCGTACCCTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTc                                                                                                                    <  8:281764/149‑1 (MQ=255)                                   ccAGGACAGCCACGGTCGTACCCTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTc                                                                                                                       <  5:169207/142‑1 (MQ=255)                                   ccAGGACAGCCACGGTCGTACCCTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTc                                                                                                                       >  6:169207/1‑142 (MQ=255)                                   ccAGGACAGCCACGGTCGTACCCTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCcca                                                                                                                <  4:92648/149‑1 (MQ=255)                                     aGGACAGCCACGGTCGTACCCTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCccac                                                                                                               >  1:192931/1‑148 (MQ=255)                                       ggcagcgaatgccgcttcgatcgccgtgccatagctgaggtcgatgccacgcgcagcgtcgacgattgcagcgtcggcagtgaaccagaacgcttcgtcagggaagtTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCaa                                                                                                            >  7:40577‑M1/108‑149 (MQ=255)                                            ccACGGTCGTACCCTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTcc                                                                                                       >  4:162155/1‑149 (MQ=255)                                            ccACGGTCGTACCCTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTcc                                                                                                       >  2:133109/1‑149 (MQ=255)                                            ccACGGTCGTACCCTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTcc                                                                                                       >  6:142143/1‑149 (MQ=255)                                             cACGGTCGTACCCTCGCCCTGTGCCTGACAAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCAACTACCCACACCTGGTGTGTTCGACGATACACAACCCATAGTCTTCCCCACCAACTTcc                                                                                                       >  2:80035/1‑148 (MQ=255)                                             cACGGTCGTACCCTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTccc                                                                                                      <  4:72175/149‑1 (MQ=255)                                                  tCGTACCCTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACg                                                                                                 <  1:271802/149‑1 (MQ=255)                                                       cccTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGc                                                                                             <  1:133109/148‑1 (MQ=255)                                                        cgatcgccgtgccatagctgaggtcgatgccacgcgcagcgtcgacgattgcagcgtcggcagtgaaccagaacgcttcgtcagggaagtTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAAc                                                                                                           <  2:336356‑M1/43‑1 (MQ=255)                                                        cgatcgccgtgccatagctgaggtcgatgccacgcgcagcgtcgacgattgcagcgtcggcagtgaaccagaacgcttcgtcagggaagtTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAAc                                                                                                           >  1:336356‑M1/91‑133 (MQ=255)                                                              ccTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGt                                                                                     <  6:212011/149‑1 (MQ=255)                                                                              gCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTACCCACACCTGTTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGc                                                                     <  1:80035/149‑1 (MQ=255)                                                                                       tCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGa                                                            >  7:193006/1‑149 (MQ=255)                                                                                                gCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGcgcg                                                   >  4:181102/1‑149 (MQ=255)                                                                                                gCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGcgcg                                                   >  3:106106/1‑149 (MQ=255)                                                                                                                    cTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATg                               >  2:222308/1‑149 (MQ=255)                                                                                                                     tCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGa                                                            >  2:68022/1‑119 (MQ=255)                                                                                                                     tCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGa                                                            <  1:68022/119‑1 (MQ=255)                                                                                                                           aTGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATCCCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGc                        >  7:305516/1‑149 (MQ=255)                                                                                                                             gtgCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGCGa                      >  4:106277/1‑149 (MQ=255)                                                                                                                                     tACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTGTTCCCCACCAACTTCCCGGACGAAGCGGTCGGGTTCCCTGCCGACGCTGCAAGCGTCGACGCTGCGGGGGGCCTCGGCCGCAGCGATGGCAGGGCGAGCgcggcg              >  8:44964/1‑144 (MQ=255)                                                                                                                                          cccACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGCGATCGAAGCGGCa           <  2:192931/147‑1 (MQ=255)                                                                                                                                          cccACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGCGATCGAAGCGGCAtt         >  8:202730/1‑149 (MQ=255)                                                                                                                                            cacaCCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGCGATCGAAGCGGCATTCg       <  7:202730/149‑1 (MQ=255)                                                                                                                                               acCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGCGATCGAAGCGGCATTCGCTg    >  8:35409/1‑149 (MQ=255)                                                                                                                                                ccTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGCGATCGAAGCGGCATTCGCTGc   <  5:142143/149‑1 (MQ=255)                                                                                                                                                ccTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGCGATCGAAGCGGCATTCGCTGc   <  1:222308/149‑1 (MQ=255)                                                                                                                                                 cTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGCGATCGAAGCGGCATTCGCTGcc  <  8:193006/149‑1 (MQ=255)                                                                                                                                                  TGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGCGATCGAAGCGGCATTCGCTGcc  <  2:328387‑M1/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    ACGTCCCAGCCAATGGCGGCTTCCCCGCCTGGTACCAGGACAGCCACGGTCGTACCCTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGCGATCGAAGCGGCATTCGCTGCC  >  NC_002947/3847011‑3847303

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.