New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3847156 =	41 (0.680)	3 (0.050)	3/256	NT	7.4%	coding (246/1329 nt)	PP_3396	hypothetical protein
	?	NC_002947	3847197 =	36 (0.620)					coding (287/1329 nt)	PP_3396	hypothetical protein

GACAGCCACGGTCGTACCCTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGCGATCGAAGCGGCATTCGCTGCCGAAGAACCTGTCGAGGGTGACCAGGTCAGCTTCGCCCG  >  NC_002947/3847049‑3847341                                                                                                                                                     |                                                                                                                                                 ggcagcgaatgccgcttcgatcgccgtgccatagctgaggtcgatgccacgcgcagcgtcgacgattgcagcgtcggcagtgaaccagaacgcttcgtcagggaagtTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCaa                                                                                                                                                  >  7:40577‑M1/108‑149 (MQ=255)      ccACGGTCGTACCCTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTcc                                                                                                                                             >  4:162155/1‑149 (MQ=255)      ccACGGTCGTACCCTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTcc                                                                                                                                             >  6:142143/1‑149 (MQ=255)      ccACGGTCGTACCCTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTcc                                                                                                                                             >  2:133109/1‑149 (MQ=255)       cACGGTCGTACCCTCGCCCTGTGCCTGACAAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCAACTACCCACACCTGGTGTGTTCGACGATACACAACCCATAGTCTTCCCCACCAACTTcc                                                                                                                                             >  2:80035/1‑148 (MQ=255)       cACGGTCGTACCCTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTccc                                                                                                                                            <  4:72175/149‑1 (MQ=255)            tCGTACCCTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACg                                                                                                                                       <  1:271802/149‑1 (MQ=255)                 cccTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGc                                                                                                                                   <  1:133109/148‑1 (MQ=255)                  cgatcgccgtgccatagctgaggtcgatgccacgcgcagcgtcgacgattgcagcgtcggcagtgaaccagaacgcttcgtcagggaagtTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAAc                                                                                                                                                 >  1:336356‑M1/91‑133 (MQ=255)                  cgatcgccgtgccatagctgaggtcgatgccacgcgcagcgtcgacgattgcagcgtcggcagtgaaccagaacgcttcgtcagggaagtTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAAc                                                                                                                                                 <  2:336356‑M1/43‑1 (MQ=255)                        ccTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGt                                                                                                                           <  6:212011/149‑1 (MQ=255)                                        gCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTACCCACACCTGTTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGc                                                                                                           <  1:80035/149‑1 (MQ=255)                                                 tCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGa                                                                                                  >  7:193006/1‑149 (MQ=255)                                                          gCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGcgcg                                                                                         >  3:106106/1‑149 (MQ=255)                                                          gCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGcgcg                                                                                         >  4:181102/1‑149 (MQ=255)                                                                              cTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATg                                                                     >  2:222308/1‑149 (MQ=255)                                                                               tCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGa                                                                                                  >  2:68022/1‑119 (MQ=255)                                                                               tCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGa                                                                                                  <  1:68022/119‑1 (MQ=255)                                                                                     aTGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATCCCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGc                                                              >  7:305516/1‑149 (MQ=255)                                                                                       gtgCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGCGa                                                            >  4:106277/1‑149 (MQ=255)                                                                                               tACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTGTTCCCCACCAACTTCCCGGACGAAGCGGTCGGGTTCCCTGCCGACGCTGCAAGCGTCGACGCTGCGGGGGGCCTCGGCCGCAGCGATGGCAGGGCGAGCgcggcg                                                    >  8:44964/1‑144 (MQ=255)                                                                                                    cccACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGCGATCGAAGCGGCa                                                 <  2:192931/147‑1 (MQ=255)                                                                                                    cccACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGCGATCGAAGCGGCAtt                                               >  8:202730/1‑149 (MQ=255)                                                                                                      cacaCCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGCGATCGAAGCGGCATTCg                                             <  7:202730/149‑1 (MQ=255)                                                                                                         acCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGCGATCGAAGCGGCATTCGCTg                                          >  8:35409/1‑149 (MQ=255)                                                                                                          gttggtggggaagacgatgggttgggtatcgtcgaacacaccaACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGCGATCg                                                         >  1:336356‑M2/44‑133 (MQ=255)                                                                                                          gttggtggggaagacgatgggttgggtatcgtcgaacacaccaACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGCGATCg                                                         <  2:336356‑M2/90‑1 (MQ=255)                                                                                                          ccTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGCGATCGAAGCGGCATTCGCTGc                                         <  5:142143/149‑1 (MQ=255)                                                                                                          ccTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGCGATCGAAGCGGCATTCGCTGc                                         <  1:222308/149‑1 (MQ=255)                                                                                                           ttggtggggaagacgatgggttgggtatcgtcgaacacaccaACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGCGATCGAAGCGGCATTCGCTGcc                                        >  7:40577‑M2/43‑149 (MQ=255)                                                                                                           cTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGCGATCGAAGCGGCATTCGCTGcc                                        <  8:193006/149‑1 (MQ=255)                                                                                                            TGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGCGATCGAAGCGGCATTCGCTGcc                                        <  2:328387‑M1/148‑1 (MQ=255)                                                                                                               TGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCt                                                                                              <  4:92216‑M1/91‑1 (MQ=255)                                                                                                               TGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCt                                                                                              >  3:92216‑M1/1‑91 (MQ=255)                                                                                                                   ttCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGCGATCGAAGCGGCATTCGCTGCCGAAGAAcc                                >  4:149083/1‑149 (MQ=255)                                                                                                                   ttCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGCGATCGAAGCGGCATTCGCTGCCGAAGAAc                                 <  3:162155/148‑1 (MQ=255)                                                                                                                     cgacgaTACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGCGATCGAAGCGGCATTCGCTGCCGAAGAACCTg                              >  6:249564/1‑149 (MQ=255)                                                                                                                        cgttACCCAAGCATTCGTCTTCCCGAGCAACTTCCCTGAAGTAGCGTTCTGGTTCACTGCCGACGCTGCTATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGCGATCGAAGCGGCATTCGCTg                                          <  3:212293/131‑1 (MQ=255)                                                                                                                           tACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGCGATCGAAGCGGCATTCGCTGCCGAAGAACCTGTCGAgg                        <  4:172626/149‑1 (MQ=255)                                                                                                                             cccaacccaTCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGCGATCGAAGCGGCATTCGCTGCCGAAGAACCTGTCGAGGGt                      <  1:328387/149‑1 (MQ=255)                                                                                                                              ccaacccaTCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGCGATCGAAGCGGCATTCGCTGCCGAAGAACCTGTCGAGGGt                      >  2:84546/1‑148 (MQ=255)                                                                                                                              ccaacccaTCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGCGATCGAAGCGGCATTCGCTGCCGAAGAACCTGTCGAGGGt                      >  7:134643/1‑148 (MQ=255)                                                                                                                                    caTCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGa                                                                                                  <  7:23182/66‑1 (MQ=255)                                                                                                                                    caTCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTCGTTCACTGCCGACGCTGCAATCGTCGa                                                                                                  >  8:23182/1‑66 (MQ=255)                                                                                                                                        gTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGCGATCGAAGCGGCATTCGCTGCCGAAGAACCTGTCGAGGGTGACCAGGTCa            <  1:81023/148‑1 (MQ=255)                                                                                                                                                 accaACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGCGATCGAAGCGGCATTCGCTGCCGAAGAACCTGTCGAGGGTGACCAGGTCAGCTTCGCCCg  >  4:109981‑M2/5‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                 GACAGCCACGGTCGTACCCTCGACCTGTGCCTGACCAAGGCCGTCAGCTCCCGGGTCGCAGGCGCACCTGGCGCACCCTCATACATGTGCACGCTACTGCCCACACCTGGTGTGTTCGACGATACCCAACCCATCGTCTTCCCCACCAACTTCCCTGACGAAGCGTTCTGGTTCACTGCCGACGCTGCAATCGTCGACGCTGCGCGTGGCATCGACCTCAGCTATGGCACGGCGATCGAAGCGGCATTCGCTGCCGAAGAACCTGTCGAGGGTGACCAGGTCAGCTTCGCCCG  >  NC_002947/3847049‑3847341

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.