New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4109808	40 (0.660)	4 (0.070)	4/248	NT	9.6%	coding (1630/2991 nt)	PP_3616	membrane protein
	?	NC_002947	= 4109890	38 (0.680)					coding (1712/2991 nt)	PP_3616	membrane protein

CGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGC  >  NC_002947/4109663‑4109953                                                                                                                                                  |                                                                                                                                                  cGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTgcgg                                                                                                                                                 <  6:281470/148‑1 (MQ=255)   gcgcCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGa                                                                                                                                              >  5:359709/1‑149 (MQ=255)      ccAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAg                                                                                                                                           <  1:136315/149‑1 (MQ=255)       cAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAgg                                                                                                                                          >  4:358323/1‑149 (MQ=255)             cAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGt                                                                                                                                    <  4:169133/149‑1 (MQ=255)                  tGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCa                                                                                                                               <  5:61506/149‑1 (MQ=255)                    aTCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCtcggtgattcgatagcgcgccg                                                                                                                             >  8:304018‑M1/1‑127 (MQ=255)                      cGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAgcgc                                                                                                                           >  4:56273/1‑149 (MQ=255)                        aaGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGt                                                                                                                         <  5:375608/149‑1 (MQ=255)                        aaGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGt                                                                                                                         >  7:28942/1‑149 (MQ=255)                          gggCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGa                                                                                                                       <  3:358323/149‑1 (MQ=255)                               ggCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCtcggtgattcgatagcgcgccgccagcaatcc                                                                                                                   >  7:192737‑M1/1‑116 (MQ=255)                               ggCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCt                                                                                                                   >  3:99407/1‑148 (MQ=255)                                    gTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGcc                                                                                                             <  6:359709/149‑1 (MQ=255)                                         ttCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTg                                                                                                                                        <  5:202750/117‑1 (MQ=255)                                         ttCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTg                                                                                                                                        >  6:202750/1‑117 (MQ=255)                                         ttCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCgaga                                                                                                         >  6:160637/1‑148 (MQ=255)                                            ccGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGc                                                                                                     >  5:184420/1‑149 (MQ=255)                                            ccGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGCGCAGACCCGATGGGATGCCAGTCATGCCCTGCGGCGACAGGTGCAGATGGCAGCGCGTGACGCTAATGCCGAGAAAGc                                                                                                     >  4:306966/1‑149 (MQ=255)                                                   tGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGa                                                                                              <  6:376195/149‑1 (MQ=255)                                                   tGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGa                                                                                              <  3:56273/149‑1 (MQ=255)                                                        gACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCt                                                                                         >  8:273940/1‑149 (MQ=255)                                                         aCATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTg                                                                                        <  7:192957/149‑1 (MQ=255)                                                          cATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGTAAGCCCTGGGATTGCTgg                                                                                       <  5:160637/149‑1 (MQ=255)                                                           aTCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCGATTGCCGAGAAAGCCCTGGGATTGCTggc                                                                                      >  5:334980/1‑149 (MQ=255)                                                                cGACCTCACCGCCCAGGCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGgcgc                                                                                 <  3:314566/149‑1 (MQ=255)                                                                  aCCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTgg                                                                                                >  3:216907/1‑132 (MQ=255)                                                                             cAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCAc                                                                    <  4:99407/149‑1 (MQ=255)                                                                              aGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGAt                                                                                             >  5:77683/1‑123 (MQ=255)                                                                              aGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGAt                                                                                             <  6:77683/123‑1 (MQ=255)                                                                              aGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCAcc                                                                   >  7:103436/1‑149 (MQ=255)                                                                                tCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGa                                                                 <  2:17923/149‑1 (MQ=255)                                                                                      aaTGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAgcagg                                                            >  6:184420‑M2/1‑143 (MQ=255)                                                                                        tGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCtcggtgattcgatagcgcgccgccagcaatcccagggctttctcggcattagcctcacgcgctgccaactgcacctgtcgccgcaggcca                                                         <  8:192737‑M1/149‑91 (MQ=255)                                                                                             tggtgCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCtcggtgattcgatagcgcgccgccagcaatcccagggctttctcggcattagcctcacgcgctgccaactgcacctgtcgccgcaggccatgact                                                    <  7:304018‑M1/149‑96 (MQ=255)                                                                                              ggtgCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACgg                                                   <  8:148786/149‑1 (MQ=255)                                                                                               gtgCTCATGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGTCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGa                                                  <  7:151073/149‑1 (MQ=255)                                                                                                    cAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGTGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAAcc                                             >  6:79964/1‑149 (MQ=255)                                                                                                    cAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAAcc                                             >  1:123757/1‑149 (MQ=255)                                                                                                     aaGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAAccc                                            >  4:143461/1‑149 (MQ=255)                                                                                                         gcCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCttt                                        <  6:334980/149‑1 (MQ=255)                                                                                                           cTGCGCGGGCAGTCCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTATTGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGATAAGCCCTTTAg                                      <  3:306966/149‑1 (MQ=255)                                                                                                              cgcgGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGc                                     <  8:103436/147‑1 (MQ=255)                                                                                                               gcgGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGAGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCAag                                  >  8:276429/1‑149 (MQ=255)                                                                                                                         ccGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGc                        >  2:11760/1‑149 (MQ=255)                                                                                                                                    ccAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGaa              <  3:143461/148‑1 (MQ=255)                                                                                                                                      aGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAgcaggccatgactggcatcccatcgggtctgcccgcgcaggcgcttgagcacca           <  7:304018‑M2/149‑55 (MQ=255)                                                                                                                                           tGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAgcaggccatgactggcatcccatcgggtctgcccgcgcaggcgcttgagcaccacggca      <  8:192737‑M2/149‑60 (MQ=255)                                                                                                                                             gCCTGTGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCAt     <  5:79964/148‑1 (MQ=255)                                                                                                                                              ccTGCtcggtgattcgatagcgcgccgccagcaatcccagggctttctcggcattagcctcacgcgctgccaactgcacctgtcgccgcaggccatgactggcatcccatcgggtctgcccgcgcaggcgcttgagcaccacggcatt    >  6:184420‑M1/1‑5 (MQ=255)                                                                                                                                               cTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGgc  >  1:141755/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                  CGGCGCCAGCGACAACGTGATCGAAGGGCTGGCCGGTCGCTTCCCGGCCATGGCGGACATCACCGACCTCACCGCCCAGTCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGC  >  NC_002947/4109663‑4109953

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.