New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4109808	40 (0.660)	4 (0.070)	4/248	NT	9.6%	coding (1630/2991 nt)	PP_3616	membrane protein
	?	NC_002947	= 4109890	38 (0.680)					coding (1712/2991 nt)	PP_3616	membrane protein

TCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAA  >  NC_002947/4109742‑4110035                                                                                                                                                     |                                                                                                                                                  tCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGa                                                                                                                                                   <  2:17923/149‑1 (MQ=255)       aaTGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAgcagg                                                                                                                                              >  6:184420‑M2/1‑143 (MQ=255)               ggtgCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACgg                                                                                                                                     <  8:148786/149‑1 (MQ=255)                gtgCTCATGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGTCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGa                                                                                                                                    <  7:151073/149‑1 (MQ=255)                     cAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGTGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAAcc                                                                                                                               >  6:79964/1‑149 (MQ=255)                     cAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAAcc                                                                                                                               >  1:123757/1‑149 (MQ=255)                      aaGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAAccc                                                                                                                              >  4:143461/1‑149 (MQ=255)                          gcCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCttt                                                                                                                          <  6:334980/149‑1 (MQ=255)                            cTGCGCGGGCAGTCCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTATTGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGATAAGCCCTTTAg                                                                                                                        <  3:306966/149‑1 (MQ=255)                               cgcgGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGc                                                                                                                       <  8:103436/147‑1 (MQ=255)                                gcgGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGAGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCAag                                                                                                                    >  8:276429/1‑149 (MQ=255)                                          ccGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGc                                                                                                          >  2:11760/1‑149 (MQ=255)                                                     ccAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGaa                                                                                                <  3:143461/148‑1 (MQ=255)                                                       aGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAgcaggccatgactggcatcccatcgggtctgcccgcgcaggcgcttgagcacca                                                                                             <  7:304018‑M2/149‑55 (MQ=255)                                                            tGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAgcaggccatgactggcatcccatcgggtctgcccgcgcaggcgcttgagcaccacggca                                                                                        <  8:192737‑M2/149‑60 (MQ=255)                                                              gCCTGTGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCAt                                                                                       <  5:79964/148‑1 (MQ=255)                                                                cTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGgc                                                                                    >  1:141755/1‑149 (MQ=255)                                                                           ggTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAag                                                                         <  7:273940/149‑1 (MQ=255)                                                                                aGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGAt                                                                     >  3:168040/1‑148 (MQ=255)                                                                                    ggCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGt                                                                              <  4:163002/135‑1 (MQ=255)                                                                                    ggCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGt                                                                              >  3:163002/1‑135 (MQ=255)                                                                                       aGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGt                                                             <  4:168040/149‑1 (MQ=255)                                                                                        gcgcGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGtt                                                            <  2:123757/149‑1 (MQ=255)                                                                                            gTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTgcg                                                         >  8:147218/1‑148 (MQ=40)                                                                                                     aTGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCggg                                                <  7:147218/148‑1 (MQ=37)                                                                                                        ccGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGc                                            >  2:52235/1‑149 (MQ=37)                                                                                                         cGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGcc                                           >  7:154620/1‑149 (MQ=37)                                                                                                         cGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGcc                                           >  7:286733/1‑149 (MQ=37)                                                                                                          gagaAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGAATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTAGGGTAGCCg                                          >  2:141769/1‑149 (MQ=255)                                                                                                           agaAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGc                                         <  8:28942/149‑1 (MQ=37)                                                                                                               aGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAg                                     >  6:186365/1‑149 (MQ=37)                                                                                                                    tGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGAt                                                                     >  7:113392/1‑112 (MQ=35)                                                                                                                    tGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGAt                                                                     <  8:113392/112‑1 (MQ=35)                                                                                                                     gggATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAgaga                                                                      <  3:147926/110‑1 (MQ=35)                                                                                                                     gggATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAgaga                                                                      >  4:147926/1‑110 (MQ=35)                                                                                                                      ggATTGCTGGCGGCGCGCTATCGAATCACCGAgcaggccatgactggcatcccatcgggtctgcccgcgcaggcgcttgagcaccacggcattgaccgactgggcggtgaggtcggtgatgtccgccatggccgggaagcgaccggcc                               >  7:192737‑M2/1‑32 (MQ=255)                                                                                                                        aTTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGGGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTgcg                                                         >  7:40693/1‑120 (MQ=18)                                                                                                                        aTTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGGGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTgcg                                                         <  8:40693/120‑1 (MQ=18)                                                                                                                            cTGGCGGCGCGGTATCGAATGACCGAGCATGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCTGTATTTGAAGAGCGGCATGGCTCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGc                         <  1:141769/148‑1 (MQ=11)                                                                                                                                cggcgCGCTATCGAATCACCGAgcaggccatgactggcatcccatcgggtctgcccgcgcaggcgcttgagcaccacggcattgaccgactgggcggtgaggtcggtgatgtccgccatggccgggaagcgaccggccagcccttcgat                    >  8:304018‑M2/1‑22 (MQ=255)                                                                                                                                      gcTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACt              >  7:159356/1‑149 (MQ=32)                                                                                                                                       cTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCggg                                                <  2:3230/114‑1 (MQ=32)                                                                                                                                       cTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCggg                                                >  1:3230/1‑114 (MQ=32)                                                                                                                                         aTCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGac                     <  7:212552/139‑1 (MQ=32)                                                                                                                                         aTCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGac                     >  8:212552/1‑139 (MQ=32)                                                                                                                                              ataaCCGAGCAGGCCACTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGc      <  7:276429/146‑1 (MQ=17)                                                                                                                                                  ccGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGaccac                  >  3:86898/1‑133 (MQ=32)                                                                                                                                                  ccGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGaccac                  <  4:86898/133‑1 (MQ=32)                                                                                                                                                  ccGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGaaa  >  6:336185/1‑149 (MQ=32)                                                                                                                                                  ccGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGaaa  <  1:52235/149‑1 (MQ=32)                                                                                                                                                     |                                                                                                                                                  TCGGTCAATGCCGTGGTGCTCAAGCGCCTGCGCGGGCAGACCCGATGGGATGCCAGTCATGGCCTGCGGCGACAGGTGCAGTTGGCAGCGCGTGAGGCTAATGCCGAGAAAGCCCTGGGATTGCTGGCGGCGCGCTATCGAATCACCGAGCAGGCCATTACGGAAAACCCCTTTAGCCAGGAGGTGCAGCGGTATTTGAAGAGCGGCATGGCGCAGGTTGAAGAGATGAAAGCGTTGCGCATCTCGGGTAGCCGCACAGTGTCCATCGAGCTGACCACCACTGCGCGTGCGAAA  >  NC_002947/4109742‑4110035

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.