| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4676930 = | 38 (0.630) | 3 (0.050) | 3/252 | NT | 7.5% | coding (1644/2250 nt) | ldcC | lysine decarboxylase |
| ? | NC_002947 | 4676980 = | 38 (0.670) | coding (1594/2250 nt) | ldcC | lysine decarboxylase | |||||
TGGCGCTTGAACTCCAGCAGCTCGGTGAGCAGGGTGCTCCACTTGCCCTTGGTGATGCCCATGGAAAACAGTACCAGGAAGCTGTACAGGCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGTCGGTCACCACTTCACCAAACCCATGCCATTGCGCCCCCGGCTGCAGCAG > NC_002947/4676787‑4677067 | tGGCGCTTGAACTCCAGCAGCTCGGTGAGCAGGGTGCTCCACTTGCCCTTGGTGATGCCCATGAAAAACAGTACCACGAAGCTGTACAGGCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCg < 8:339401/148‑1 (MQ=255) agcatctggcagccgccaagtgccgagggcatcccccgtctggccgcgcaggactggctgctgcagccgggggcgcaatggcatgggtttggtgaagtggtgaccgactatgtgctgctcgacccgctgaaggtgaccttggtaaTGc > 1:154433‑M1/146‑148 (MQ=255) gcatctggcagccgccaagtgccgagggcatcccccgtctggccgcgcaggactggctgctgcagccgggggcgcaatggcatgggtttggtgaagtggtgaccgactatgtgctgctcgacccgctgaaggtgaccttggtaaTGCCg < 8:147818‑M1/5‑1 (MQ=255) gcTTGAACTCCAGCAGCTCGGTGAGCAGGGTGCTCCACTTGCCCTTGGTGATGCCCATGGAAAACAGTACCAGGAAGCTGTACAGGCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATa < 6:36219/149‑1 (MQ=255) catctggcagccgccaagtgccgagggcatcccccgtctggccgcgcaggactggctgctgcagccgggggcgcaatggcatgggtttggtgaagtggtgaccgactatgtgctgctcgacccgctgaaggtgaccttggtaaTGCCgg < 6:378544‑M1/6‑1 (MQ=255) catctggcagccgccaagtgccgagggcatcccccgtctggccgcgcaggactggctgctgcagccgggggcgcaatggcatgggtttggtgaagtggtgaccgactatgtgctgctcgacccgctgaaggtgaccttggtaaTGCCgg > 2:98574‑M1/144‑149 (MQ=255) gAACTCCAGCAGCTCGGTGAGCAGGGTGCTCCACTTGCCCTTGGTGATGCCCATGGAAAACAGTACCAGGAAGCTGTACAGGCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATAcc < 2:291852/147‑1 (MQ=255) gcagccgccaagtgccgagggcatcccccgtctggccgcgcaggactggctgctgcagccgggggcgcaatggcatgggtttggtgaagtggtgaccgactatgtgctgctcgacccgctgaaggtgaccttggtaaTGCCgg < 8:110790‑M1/6‑1 (MQ=255) gcagccgccaagtgccgagggcatcccccgtctggccgcgcaggactggctgctgcagccgggggcgcaatggcatgggtttggtgaagtggtgaccgactatgtgctgctcgacccgctgaaggtgaccttggtaaTGCCgg > 7:110790‑M1/138‑143 (MQ=255) tGAGCAGGGTGCTCCACTTGCCCTTGGTGATGCCCATGGAAAACAGTACCAGGAAGCTGTACAGGCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACAcc > 6:338952/1‑148 (MQ=255) gCAGGGTGCTCCACTTGCCCTTGGTGATGCCCATGGAAAACAGTACCAGGAAGCTGTACAGGCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCt < 8:15602/149‑1 (MQ=255) gggTGCTCCACTTGCCCTTGCTGATGCCCATGGAAAACAGTACCAGGAAGCTGTACAGGCCCGTATT‑‑TT‑‑CCACCACCAGCACGCCTTACCAGAGAAACTTGCTGACTACCGCTGCCGGC‑ATACCGCGCGCGCCCAGCACACCGACTgcg > 6:356367/1‑149 (MQ=255) ggTGCTCCACTTGCCCTTGGTGATGCCCATGGAAAACAGTACCAGGAAGCTGTACAGGCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTgcg > 2:106503/1‑148 (MQ=255) cccTTGGTGATGCCCATGGAAAACAGTACCAGGAAGCTGTACAGGCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCAt < 7:152774/149‑1 (MQ=255) gcgcaggactggctgctgcagccgggggcgcaatggcatgggtttggtgaagtggtgaccgactatgtgctgctcgacccgctgaaggtgaccttggtaaTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGc > 1:187258‑M1/101‑149 (MQ=255) gTGATGCCCATGGAAAACAGTACCAGGAAGCTGTACAGGCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCa < 2:68560/148‑1 (MQ=255) gactggctgctgcagccgggggcgcaatggcatgggtttggtgaagtggtgaccgactatgtgctgctcgacccgctgaaggtgaccttggtaaTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTAcc > 4:44245‑M1/95‑149 (MQ=255) actggctgctgcagccgggggcgcaatggcatgggtttggtgaagtggtgaccgactatgtgctgctcgacccgctgaaggtgaccttggtaaTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCa > 7:152791‑M1/94‑149 (MQ=255) cccATTGAAAACAGTACCAGGAATCTGTACAGGCCCGTTTTTCTTACCCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAg < 1:312504/148‑1 (MQ=255) cccATGGAAAACAGTACCAGGAAGCTGTACAGGCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCAc > 8:103379/1‑149 (MQ=255) cATGGAAAACAGTACCAGGAAGCTGTACAGGCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCt > 3:197368/1‑149 (MQ=255) aaaaCAGTACCAGGAAGCTGTACATGCCCGTTTT‑‑TT‑‑CCACCACCATCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGGTATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAg < 1:106503/149‑1 (MQ=255) tACCAGGAAGCTGTACAGGCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTc > 5:378544/1‑147 (MQ=255) cAGGAAGCTGTACATGCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGagca < 5:338952/149‑1 (MQ=255) cAGGAAGCTGTACAGGCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGagc < 5:218496/148‑1 (MQ=255) cAGGAAGCTGTACAGGCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGagc > 6:218496/1‑148 (MQ=255) cAGGAAGCTGTACAGGCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGag > 5:197615/1‑147 (MQ=255) gAAGCTGTACAGGCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAgcagca > 6:139739/1‑149 (MQ=255) cAGGCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGTCgg < 5:64723/149‑1 (MQ=255) cAGGCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGTCg < 7:219021/148‑1 (MQ=255) gCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGCGTCGAGCAGCACATAGTCGGTca > 2:228855/1‑149 (MQ=255) cccGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGTCGGTcac < 4:197368/149‑1 (MQ=255) ccGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGTCGGTcac > 2:257708/1‑148 (MQ=255) cGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACAGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGTCGGTcacca < 5:144124/149‑1 (MQ=255) t‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGTCGGTCACCACTTCAc < 5:139739/148‑1 (MQ=255) caccaccaGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGTCGGTCACCACTTCACCa > 4:211384/1‑148 (MQ=255) caccaccaGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGTCGGTCACCACTTCACCa > 3:257515/1‑148 (MQ=255) caccaccaGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGTCGGTCACCACTTCACCa > 7:213289/1‑148 (MQ=255) caccaccaGACCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGTCGGTCACCCCTTCACCa > 2:330184/1‑148 (MQ=255) accaccaGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGTCGGTCACCACTTCACCaaa > 1:343610/1‑149 (MQ=255) ccaGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGTCGGTCACCACTTCACCAAACCCa < 2:343610/149‑1 (MQ=255) gCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTAc < 8:33885/88‑1 (MQ=255) gCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTAc > 7:33885/1‑88 (MQ=255) cccGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGTCGGTCACCACTTCACCAAACCCATGc > 8:244561/1‑148 (MQ=255) gcgTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTTCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGTCGGTCACCACTTCACCAAACCCATGCCAtt < 5:356367/149‑1 (MQ=255) aCTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGTCGGTcac < 6:23617/112‑1 (MQ=255) aCTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGTCGGTcac > 5:23617/1‑112 (MQ=255) cTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGTCGGTCACCACTTCACCAAACCCATGCCATTGCGCCCCCGGCTGcagcag > 1:243046/1‑149 (MQ=255) | TGGCGCTTGAACTCCAGCAGCTCGGTGAGCAGGGTGCTCCACTTGCCCTTGGTGATGCCCATGGAAAACAGTACCAGGAAGCTGTACAGGCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGTCGGTCACCACTTCACCAAACCCATGCCATTGCGCCCCCGGCTGCAGCAG > NC_002947/4676787‑4677067 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |