New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4676930 =	38 (0.630)	3 (0.050)	3/252	NT	7.5%	coding (1644/2250 nt)	ldcC	lysine decarboxylase
	?	NC_002947	4676980 =	38 (0.670)					coding (1594/2250 nt)	ldcC	lysine decarboxylase

CCCTTGGTGATGCCCATGGAAAACAGTACCAGGAAGCTGTACAGGCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTCACCACTTCACCAAACCCATGCCATTGCGCCCCCGGCTGCAGCAGCCAGTCCTGCGCGGCCAGACGGGGGATGCCCTCGGCACTTGGCGGCTGCCAGATGCTGAAC  >  NC_002947/4676832‑4677128                                                                                                                                                          |                                                                                                                                                      cccTTGGTGATGCCCATGGAAAACAGTACCAGGAAGCTGTACAGGCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCAt                                                                                                                                                       <  7:152774/149‑1 (MQ=255)       gTGATGCCCATGGAAAACAGTACCAGGAAGCTGTACAGGCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCa                                                                                                                                                  <  2:68560/148‑1 (MQ=255)         gactggctgctgcagccgggggcgcaatggcatgggtttggtgaagtggtgaccgactatgtgctgctcgacccgctgaaggtgaccttggtaaTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTAcc                                                                                                                                                   >  4:44245‑M1/95‑149 (MQ=255)          actggctgctgcagccgggggcgcaatggcatgggtttggtgaagtggtgaccgactatgtgctgctcgacccgctgaaggtgaccttggtaaTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCa                                                                                                                                                  >  7:152791‑M1/94‑149 (MQ=255)             cccATTGAAAACAGTACCAGGAATCTGTACAGGCCCGTTTTTCTTACCCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAg                                                                                                                                                <  1:312504/148‑1 (MQ=255)             cccATGGAAAACAGTACCAGGAAGCTGTACAGGCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCAc                                                                                                                                           >  8:103379/1‑149 (MQ=255)               cATGGAAAACAGTACCAGGAAGCTGTACAGGCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCt                                                                                                                                         >  3:197368/1‑149 (MQ=255)                    aaaaCAGTACCAGGAAGCTGTACATGCCCGTTTT‑‑TT‑‑CCACCACCATCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGGTATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAg                                                                                                                                     <  1:106503/149‑1 (MQ=255)                           tACCAGGAAGCTGTACAGGCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTc                                                                                                                               >  5:378544/1‑147 (MQ=255)                              cAGGAAGCTGTACATGCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGagca                                                                                                                          <  5:338952/149‑1 (MQ=255)                              cAGGAAGCTGTACAGGCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGagc                                                                                                                           <  5:218496/148‑1 (MQ=255)                              cAGGAAGCTGTACAGGCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGagc                                                                                                                           >  6:218496/1‑148 (MQ=255)                              cAGGAAGCTGTACAGGCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGag                                                                                                                            >  5:197615/1‑147 (MQ=255)                                 gAAGCTGTACAGGCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAgcagca                                                                                                                       >  6:139739/1‑149 (MQ=255)                                          cAGGCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑Cgg                                                                                                             <  5:64723/149‑1 (MQ=255)                                          cAGGCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑Cg                                                                                                              <  7:219021/148‑1 (MQ=255)                                             gCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGCGTCGAGCAGCACATAGT‑CGGTca                                                                                                          >  2:228855/1‑149 (MQ=255)                                              cccGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTcac                                                                                                         <  4:197368/149‑1 (MQ=255)                                               ccGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTcac                                                                                                         >  2:257708/1‑148 (MQ=255)                                                cGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACAGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTcacca                                                                                                       <  5:144124/149‑1 (MQ=255)                                                         t‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTCACCACTTCAc                                                                                                 <  5:139739/148‑1 (MQ=255)                                                             caccaccaGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTCACCACTTCACCa                                                                                               >  3:257515/1‑148 (MQ=255)                                                             caccaccaGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTCACCACTTCACCa                                                                                               >  4:211384/1‑148 (MQ=255)                                                             caccaccaGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTCACCACTTCACCa                                                                                               >  7:213289/1‑148 (MQ=255)                                                             caccaccaGACCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTCACCCCTTCACCa                                                                                               >  2:330184/1‑148 (MQ=255)                                                              accaccaGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTCACCACTTCACCaaa                                                                                             >  1:343610/1‑149 (MQ=255)                                                                  ccaGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTCACCACTTCACCAAACCCa                                                                                         <  2:343610/149‑1 (MQ=255)                                                                     gCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTAc                                                                                                                                                    >  7:33885/1‑88 (MQ=255)                                                                     gCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTAc                                                                                                                                                    <  8:33885/88‑1 (MQ=255)                                                                      cccGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTCACCACTTCACCAAACCCATGc                                                                                      >  8:244561/1‑148 (MQ=255)                                                                         gcgTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTTCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTCACCACTTCACCAAACCCATGCCAtt                                                                                  <  5:356367/149‑1 (MQ=255)                                                                                       aCTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTcac                                                                                                         >  5:23617/1‑112 (MQ=255)                                                                                       aCTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTcac                                                                                                         <  6:23617/112‑1 (MQ=255)                                                                                            cTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTCACCACTTCACCAAACCCATGCCATTGCGCCCCCGGCTGcagcag                                                               >  1:243046/1‑149 (MQ=255)                                                                                                  tggtaatgccgggcctgagcgcagacggtgtgctgggcgcgcgcggtatcccggcaTTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTCACCACTTCACCAAACCCATGCCATTGCGCCCCCGGCTGCAGCAGCCAGt                                                          >  7:152791‑M2/57‑149 (MQ=255)                                                                                                   ggtaatgccgggcctgagcgcagacggtgtgctgggcgcgcgcggtatcccggcaTTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTCACCACTTCACCAAACCCATGCCATTGCGCCCCCGGCTGCAGCAGCCAGTc                                                         >  4:44245‑M2/56‑149 (MQ=255)                                                                                                         gccgggcctgagcgcagacggtgtgctgggcgcgcgcggtatcccggcaTTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTCACCACTTCACCAAACCCATGCCATTGCGCCCCCGGCTGCAGCAGCCAGTCCTgcgc                                                   >  1:187258‑M2/50‑149 (MQ=255)                                                                                                         CCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTCACCACTTCACCAAACCCATGCCATTGCGCCCCCGGCTGCAGCAGCCAGTCCTGcgcg                                                  >  6:197615‑M1/1‑149 (MQ=255)                                                                                                            GG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTCACCACTTCACCAAACCCATGCCATTGCGCCCCCGGCTGCAGCAGCCAGTCCTGCGCGGc                                                <  6:62813‑M1/148‑1 (MQ=255)                                                                                                                            ccAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTCACCACTTCACCAAACCCATGCCATTGCGCCCCCGGCTGCAGCAGCCAGTCCTGCGCGGCCAGACGGGGGATGccc                                <  2:243046/149‑1 (MQ=255)                                                                                                                              aGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTCACCACTTCACCAAACCCATGCCATTGCGCCCCCGGCTGCAGCAGCCAGTCCTGCGCGGCCAGACGGGGGATGCCCTc                              <  7:103379/149‑1 (MQ=255)                                                                                                                                  cacCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTCACCACTTCACCAAACCCATGCCATTGCGCCCCCGGCTGCAGCAGCCAGTCCTGCGCGGCCAGACGGGGGATGCCCTCGGCa                          >  7:147818/1‑149 (MQ=255)                                                                                                                                   acCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTCACCACTTCACCAAACCCATGCCATTGCGCCCCCGGCTGCAGCAGCCAGTCCTGCGCGGCCAGACGGGGGATGCCCTCGGCAc                         >  1:67625/1‑149 (MQ=255)                                                                                                                                     cGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTCACCACTTCACCAAACCCATGCCATTGCGCCCCCGGCTGCAGCAGCCAGTCCTGCGCGGCCAGACGGGGGATGCCCTCGGCACtt                       >  6:286353/1‑149 (MQ=255)                                                                                                                                           cgcTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTCACCACTTCACCAAACCCATGCCATTGCGCCCCCGGCTGCAGCAGCCAGTCCTGCGCGGCCAGACGGGGGATGCCCTCGGCACTTggc                    <  7:244561/146‑1 (MQ=255)                                                                                                                                            gcTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTCACCACTTCACCAAACCCATGCCATTGCGCCCCCGGCTGCAGCAGCCAGTCCTGCGCGGCCAGACGGGGGATGCCCTCGGCACTTGGCGGCt                <  8:213289/149‑1 (MQ=255)                                                                                                                                             cTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGTGGGGTCACCACTTCACCAAACCCATGCCATTGCGCCCCCGGCTGCAGCAGCCAGTCCTGCGCGGCCAGACGGGGGATGCCCTCGGCACTTGGCGGCt                >  1:284385/1‑149 (MQ=255)                                                                                                                                             cTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTCACCACTTCACCAAACCCATGCCATTGCGCCCCCGGCTGCAGCAGCCAGTCCTGCGCGGCCAGACGGGGGATGCCCTCGGCACTTGGCGGCTg               >  6:160373/1‑149 (MQ=255)                                                                                                                                                aGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTCACCACTTCACCAAACCCATGCCATTGCGCCCCCGGCTGCAGCAGCCAGTCCTGCGCGGCCAGACGGGGGATGCCCTCGGCACTTGGCGGCTGc              <  5:62813/147‑1 (MQ=255)                                                                                                                                                    ccggcaTTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTCACCACTTCACCAAACCCATGCCATTGCGCCCCCGGCTGCAGCAGCCAGTCCTGCGCGGCCAGACGGGGGATGCCCTCGGCACTTGGCGGCTGc              <  8:110790‑M2/137‑1 (MQ=255)                                                                                                                                                    ccggcaTTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTCACCACTTCACCAAACCCATGCCATTGCGCCCCCGGCTGCAGCAGCCAGTCCTGCGCGGCCAGACGGGGGATGCCCTCGGCACTTGGCGGCTGc              >  7:110790‑M2/7‑143 (MQ=255)                                                                                                                                                    ccggcaTTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTCACCACTTCACCAAACCCATGCCATTGCGCCCCCGGCTGCAGCAGCCAGTCCTGCGCGGCCAGACGGGGGATGCCCTCGGCACTTGGCGGCTGCCAGATg        >  2:98574‑M2/7‑149 (MQ=255)                                                                                                                                                    ccggcaTTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTCACCACTTCACCAAACCCATGCCATTGCGCCCCCGGCTGCAGCAGCCAGTCCTGCGCGGCCAGACGGGGGATGCCCTCGGCACTTGGCGGCTGCCAGATg        <  6:378544‑M2/143‑1 (MQ=255)                                                                                                                                                     cggcaTTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTCACCACTTCACCAAACCCATGCCATTGCGCCCCCGGCTGCAGCAGCCAGTCCTGCGCGGCCAGACGGGGGATGCCCTCGGCACTTGGCGGCTGCCAGATGc       <  8:147818‑M2/144‑1 (MQ=255)                                                                                                                                                       gcaTTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTCACCACTTCACCAAACCCATGCCATTGCGCCCCCGGCTGCAGCAGCCAGTCCTGCGCGGCCAGACGGGGGATGCCCTCGGCACTTGGCGGCTGCCAGATGCt      >  1:154433‑M2/4‑148 (MQ=255)                                                                                                                                                          ttACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTCACCACTTCACCAAACCCATGCCATTGCGCCCCCGGCTGCAGCAGCCAGTCCTGCGCGGCCAGACGGGGGATGCCCTCGGCACTTGGCGGCTGCCAGATGCTGAac  <  2:154433/149‑1 (MQ=255)                                                                                                                                                          |                                                                                                                                                      CCCTTGGTGATGCCCATGGAAAACAGTACCAGGAAGCTGTACAGGCCCGTTTT‑‑TT‑‑CCACCACCAGCCCGCGTTCCCAGAGAAACTTGCTGACTACCGCTGCCGGG‑ATACCGCGCGCGCCCAGCACACCGTCTGCGCTCAGGCCCGGCATTACCAAGGTCACCTTCAGCGGGTCGAGCAGCACATAGT‑CGGTCACCACTTCACCAAACCCATGCCATTGCGCCCCCGGCTGCAGCAGCCAGTCCTGCGCGGCCAGACGGGGGATGCCCTCGGCACTTGGCGGCTGCCAGATGCTGAAC  >  NC_002947/4676832‑4677128

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.