New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 6107943 = | 52 (0.860) | 7 (0.120) | 6/258 | NT | 14.2% | coding (210/873 nt) | pdxY | pyridoxamine kinase |
? | NC_002947 | 6107992 = | 34 (0.580) | coding (161/873 nt) | pdxY | pyridoxamine kinase |
GTGCCCCATGACCGGGTCGCACAGGTATAACGCTTTTGGGTTTACCGCCTTGATCCGCTCGACGCCGGCCAGGATCGCTCGCCCTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGCACTTCCCCCGCCCACTGGCCATACTGTGTGTGATTGGAGAACTGCACGGTATTGAGGGGCCAGGCATTGACCCCGATACGCTGCATGGGAAATACCGCG > NC_002947/6107796‑6108084 | gcacctgctcgccattcagtcccacgtggtgttcggccacgccggcaacagcgccgcggtatttcccatgcagcgtatcggggtcaatgcctggcccctcaataccgtgcagttctccaatcacacacagtatggccagtgggcggggg < 4:153157‑M1/2‑1 (MQ=255) gcacctgctcgccattcagtcccacgtggtgttcggccacgccggcaacagcgccgcggtatttcccatgcagcgtatcggggtcaatgcctggcccctcaataccgtgcagttctccaatcacacacagtatggccagtgggcggggg > 2:285235‑M1/148‑149 (MQ=255) tggcctttGACCTGGTGGCACACGTATAACGCTTTTTGGTTTACCGCCTTGATCCGCTCGATGCCGGCCATGATGGCTCGCCCTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGAAGTGGCCCAGCTCGCCGATGTTgg < 7:51973/141‑1 (MQ=255) ccccATGACCGGGTCGCACAGGTATAACGCTTTTGGGTTTACCGCCTTGATCCGCTCGACGCCGGCCAGGATCGCTCGCCCTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGaaa < 7:200128/149‑1 (MQ=255) ccccATGACCGGGTCGCACAGGTATAACGCTTTTGGGTTTACCGACTTGATCCGCTCGACGCCGGCCAGGATCGCTCGCCCTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGaaa < 7:316711/149‑1 (MQ=255) cccATGACCGGGTCGCACAGGTATAACGCTTTTGGGTTTACCGCCTTGATCCGCTCGACGCCGGCCAGGATCGCTCGCCCTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAAt > 8:213513/1‑149 (MQ=255) ccGGGTCGCACAGGTATAACGCTTTTGGGTTTACCGCCTTGATCCGCTCGACGCCGGCCAGGATCGCTCGCCCTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTcc < 8:28874/149‑1 (MQ=255) cGGGTCGCACAGGTATAACGCTTTTGGGTTTACCGCCTTGATCCGCTCGACGCCGGCCAGGATCGCTCGCCCTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTcca > 6:306725/1‑149 (MQ=255) gggTCGCACAGGTATAACGCTTTTGGGTTTACCGCCTTGATCCGCTCGACGCCGGCCAGGATCGCTCGCCCTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTccac < 2:322206/149‑1 (MQ=255) ggTCGCACAGGTATAACGCTTTTGGGTTTACCGCCTTGATCCGCTCGACGCCGGCCAGGATCGCTCGCCCTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTccacc < 7:332509/149‑1 (MQ=255) ggTCGCACAGGTATAACGCTTTTGGGTTTACCGCCTTGATCCGCTCGACGCCGGCCAGGATCGCTCGCCCTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTccac > 5:353261/1‑148 (MQ=255) ccacgtggtgttcggccacgccggcaacagcgccgcggtatttcccatgcagcgtatcggggtcaatgcctggcccctcaataccgtgcagttctccaatcacacacagtatggccagtgggcgggGGAAATGCCTTCCACCAACGCAg < 1:217234‑M1/23‑1 (MQ=255) cacgtggtgttcggccacgccggcaacagcgccgcggtatttcccatgcagcgtatcggggtcaatgcctggcccctcaataccgtgcagttctccactcacacacagtatggccagtgggcgggGGCAATGCCTTCCACCAACGCAg < 6:380626‑M1/23‑1 (MQ=255) aaCGCTTTTGGGTTTACCGCCTTGATCCGCTCGACGCCGGCCAGGATCGCTCGCACTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTg > 8:331903/1‑149 (MQ=255) ttGGGTTTACCGCCTTGATCCGCTCGACGCCGGCCAGGATCGCTCGCCCTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTggg > 6:380287/1‑149 (MQ=255) ttGGGTTTACCGCCTTGATCCGCTCGACGCCGGCCAGGATCGCTCGCCCTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTgg < 6:143444/148‑1 (MQ=255) ttGGGTTTACCGCCTTGATCCGCTCGACGCCGGCCAGGATCGCTCGCCCTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTg < 5:306725/147‑1 (MQ=255) tGGGTTTACCGCCTTGATCCGCTCGACGCCGGCCAGGATCGCTCGCCCTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTgggg > 7:290590/1‑149 (MQ=255) tGGGTTTACCGCCTTGATCCGCTCGACGCCGGCCAGGATCGCTCGCCCTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTggg < 2:240247/148‑1 (MQ=255) gggTTTACCGCCTTGATCCGCTCGACGCCGGCCAGGATCGCTCGCCCTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTgggg < 2:75333/148‑1 (MQ=255) acgccggcaacagcgccgcggtatttcccatgcagcgtatcggggtcaatgcctggcccctcaataccgtgcagttctccaatcacacacagtatgtccagtgggcgggGGAAGTGCTTGCC‑CCAACGCAGGAATTTGCGCTGGGGCaa > 6:253731‑M1/110‑149 (MQ=255) acgccggcaacagcgccgcggtatttcccatgcagcgtatcggggtcaatgcctggcccctcaataccgtgcagttctccaatcacacacagtatggccagtgggcgggGGAAGTGCTTGCC‑CCAACGCAGGAATTTGCGCTGGGGCaa > 8:13135‑M1/110‑149 (MQ=255) cGCCTTGATCCGCTCGACGCCGGCCAGGATCGCTCGCCCTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGCACtt > 3:191921/1‑149 (MQ=255) ccTTGATCCGCTCGACGCCGGCCAGGATCGCTCGCCCTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGCACTTcc > 4:129073/1‑149 (MQ=255) ccTTGATCCGCTCGACGCCGGCCAGGATCGCTCGCCCTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGCACTTcc > 2:231548/1‑149 (MQ=255) cTTGATCCGCTCGACGCCGGCCAGGATCGCTCGCCCTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGCACTTccc < 1:231548/149‑1 (MQ=255) gcgccgcggtatttcccatgcagcgtatcggggtcaatgcctggcccctcaataccgtgcagttctccaatcacacacagtatggccagtgggcgggGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGCACTTccccc > 5:380626‑M1/98‑149 (MQ=255) gATCCGCTCGACGCCGGCCAGGATCGCTCGCCCTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGCACTTccccc < 6:274345/148‑1 (MQ=255) gATCCGCTCGACGCCGGCCAGGATCGCTCGCCCTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGCACTTCCCCCg > 2:218359/1‑149 (MQ=255) aTCCGCTCGACGCCGGCCAGGATCGCTCGCCCTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGCACTTCCCCCGc < 1:299888/149‑1 (MQ=255) ccgcggtatttcccatgcagcgtatcggggtcaatgcctggcccctcaataccgtgcagttctccaatcacacacagtatggccagtgggcgggGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGCACTTCCCCCGcc > 2:217234‑M1/95‑149 (MQ=255) ccGGCCAGGATCGCTCGCCCTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGCACTTCCCCCGCCCACTGGCCATa < 1:218359/149‑1 (MQ=255) aGGATCGCTCGCCCTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGCACTTCCCCCGCCCACTGGCCATACtgtgt < 7:331903/149‑1 (MQ=255) ggATCGCTCGCCCTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGCACTTCCCCCGCCCACTGGCCATACtgtgtg < 3:104647/149‑1 (MQ=255) ggATCGCTCGCCCTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGCACTTCCCCCGCCCACTGGCCATACtgtgtg > 3:232603/1‑149 (MQ=255) cgtatcggggtcaatgcctggcccctcaataccgtgcagttctccaatcacacacagtatggcccgtgggcgggGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGCACTTCCCCCGCCCACTGGCCATACtgtgtgtg > 4:78131‑M1/75‑149 (MQ=255) tcgcCCTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACTAACGCAGGAATTTGCGCTGGGGCAAGCACTTCCCCCGCCCACTGGCCATACTGTGTGTGATTg > 3:153157/1‑148 (MQ=255) tcgcCCTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCt < 3:364916/103‑1 (MQ=255) tcgcCCTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCACAGCTCGCCGATGTTGGAAATGCCTTCAACCAACGCACGAATTTCCGCt > 4:364916/1‑103 (MQ=255) gcCCTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGCACTTCCCCCGCCCACTGGCCATACTGTGTGTGATTGga < 7:213513/148‑1 (MQ=255) gcCCTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGGGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGCACTTCCCCCGCCCACTGGCCATACTGTGTGTGATTGga < 7:60755/148‑1 (MQ=255) cccTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGc < 7:38401/109‑1 (MQ=255) cccTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGc > 8:38401/1‑109 (MQ=255) ttCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGCACTTCCCCCGCCCACTg < 6:49332/120‑1 (MQ=255) ttCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGCACTTCCCCCGCCCACTg > 5:49332/1‑120 (MQ=255) ggCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGCACTTCCCCCGCCCACTGGCCATACTGTGTGTGATTGGAGAACTGCACg < 2:40617/148‑1 (MQ=255) gCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGCACTTCACCCGCCCACTGGCCATACTGTGTGTGATTGGAGAACTGCACgg > 6:151750/1‑148 (MQ=255) cACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGCACTTCCCCCGCCCACTGGCCATACTGTGTGTGATTGGACAACTGCACGGTa < 4:191921/149‑1 (MQ=255) cTGCCCAGGTAGCCTGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGCACTTCCCCCGCCCACTGGCCATTCTGTGTGTGATTGGAGAACTGCACGGTAtt < 5:151750/149‑1 (MQ=255) cAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGCACTTCCCCCGCCCACTGGCCATACTGTGTGTGATTGGAGAACTGCACGGTATTGAggg < 4:232603/149‑1 (MQ=255) gCCGGAAAGCACCGAATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGCACTTCCCCCGCCCACTGGCCATACTGTGTGTGATTGGAGAACTGCACGGTATTGAGGGGCCAgg > 6:2099/1‑149 (MQ=255) ggAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCtt < 8:234912/50‑1 (MQ=255) ggAAAGCACCGCATCGCAGTGGCCCAGCTAGCCGATGTTGGAAATGCCtt > 7:234912/1‑50 (MQ=255) gAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGCACTTCCCCCGCCCACTGGCCATACTGTGTGTGATTGGAGAACTGCACGGTATTGAGGGGCCAGGCAtt < 5:124325/149‑1 (MQ=255) aaGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGCACTTCCCCCGCCCACTGGCCATACTGTGTGTGATTGGAGAACTGCACGGTATTGAGGGGCCAGGCATTGa < 3:129073/149‑1 (MQ=255) aCCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGCACTTCCCCCGCCCACTGGCCATACTGTGTGTGATTGGAGAACTGCACGGTATTGAGGGGCCAGGCATTGAcccc > 1:161880/1‑149 (MQ=255) cAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGCACTTCCCCCGCCCACTGGCCATACTGTGTGTGATTgg < 4:258721/103‑1 (MQ=255) cAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGCACTTCCCCCGCCCACTGGCCATACTGTGTGTGATTgg > 3:258721/1‑103 (MQ=255) gggCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGCACTTCCCCCGCCCACTGGCCATACTGTGTGTGATTGGAGAACTGCACGGTATTGAGGGGCCAGGCATTGACCCCGATACGCTGCAt < 6:303777/148‑1 (MQ=255) cAGCTCGCCGATGATGCAAATGCCTTCCACCAACGCACGAATTTGCGCTGGGGCAAGCACTTCCACCGCCCACTGGCCATACTGTCTGTGATTCCAGAAATTAACCGAATAGACGGGCCAGGCATTGACCAACATACCCTGAATgaga > 4:83708/1‑148 (MQ=255) gCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAATCACTTCCCCCGCCCACTGGCCATACTGTGTGTGATTGGAGAACTGCACGGTATTGAGGGGCCAGGCATTGACCCCGATACGCTGCATGGGAAATAcc < 5:2099/148‑1 (MQ=255) gCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGCACTTCCCCCGCCCACTGGCCATACTGTGTGTGATTGGAGAACTGCACGGTATTGAGGGGCCAGGCATTGACCCCGATACGCTGCATGGGAAATACcg > 1:187906/1‑149 (MQ=255) cGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGCACTTCCCCCGCCCACTGGCCATACTGTGTGTGATTGGAGAACTGCACGGTATTGAGGGGCCAGGCATTGACCCCGATACGCTGCATGGGAAATACcgcg > 8:160596/1‑149 (MQ=255) cGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGCACTTCCCCCGCCCACTGGCCATACTGTGTGTGATTGGAGAACTGCACGGTATTGAGGGGCCAGGCATTGACCCCGATACGCTGCATGGGAAATACcgcg < 6:353261/149‑1 (MQ=255) | GTGCCCCATGACCGGGTCGCACAGGTATAACGCTTTTGGGTTTACCGCCTTGATCCGCTCGACGCCGGCCAGGATCGCTCGCCCTTGTTCGGCACTGCCCAGGTAGCCGGAAAGCACCGCATCGCAGTGGCCCAGCTCGCCGATGTTGGAAATGCCTTCCACCAACGCAGGAATTTGCGCTGGGGCAAGCACTTCCCCCGCCCACTGGCCATACTGTGTGTGATTGGAGAACTGCACGGTATTGAGGGGCCAGGCATTGACCCCGATACGCTGCATGGGAAATACCGCG > NC_002947/6107796‑6108084 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |