New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1144524	48 (0.800)	3 (0.050)	3/252	NT	6.2%	coding (162/414 nt)	PP_1004	hypothetical protein
	?	NC_002947	= 1144578	45 (0.790)					coding (108/414 nt)	PP_1004	hypothetical protein

TTGCGCTGACCTTGGCCCGGCGCTGGATCACCTTGCCGTTGCGCCAGTTATGCAGAATTGGCCCGAACAGCCGGTGGTTCTCCAGCCATGCCGACAGGCGCGGTGAACTGCGTGTGGCGGCCCAGGCGGCCAGCAGGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCAGGATTCCATACGACAGGCGGGCGAGTTTCGAGCGGGCTGGTAGGGTCATGTTCTCACTGCATAAAACGGTTCGGCCACCGGAGGGGTGGC  >  NC_002947/1144430‑1144726                                                                                                                                                     |                                                                                                                                                     ttGCGCTGACCTTGGCCCGGCGCTGGATCACCTTGCCGTTGCGCCAGTTATGCAGAATTGGCCCGAACAGCCGGTGGTTCTCCAGCCATGCCGACAGGCGCGGTGAACTGCGTGTGGCGGCCCAGGCGGCCAGCAGGATGAACTCggtg                                                                                                                                                      <  7:271946/149‑1 (MQ=255)    cgcTGACCTTGGCCCGGCGCTGGATCACCTTGCCGTTGCGCCAGTTATGCAGAATTGGCCCGAACAGCCGGTGGTTCTCCAGCCATGCCGACAGGCGCGGTGAACTGCGTGTGGCGGCCCAGGCGGCCAGCAGGATGAACTCGGTGgtc                                                                                                                                                   <  8:300346‑M2/149‑4 (MQ=255)      cTGACCTTGGCCCGGCGCTGGATCACCTTGCCGTTGCGCCAGTTATGCAGAATTGGCCCGAACAGCCGGTGGTTCTCCAGCCATGCCGACAGGCGCGGTGAACTGCGTGTGGCGGCCCAGGCGGCCAGCAGGATGAACTCGGTGgtcgg                                                                                                                                                 >  5:281588‑M2/1‑144 (MQ=255)                      gcTGGATCACCTTGCCGTTGCGCCAGTTATGCAGAATTGGCCCGAACAGCCGGTGGTTCTCCAGCCATGCCGACAGGCGCGGTGAACTGCGTGTGGCGGCCCAGGCGGCCAGCAGGATGAACTCGGTGGTCGGCAAGCCGGGAATcac                                                                                                                                  >  6:286731/1‑148 (MQ=255)                              aCCTTGCCGTTGCGCCAGTTATGCAGAATTGGCCCGAACAGCCGGTGGTTCTCCAGCCATGCCGACAGGCGCGGTGAACTGCGTGTGGCGGCCCAGGCGGCCAGCAGGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGAc                                                                                                                         <  8:215724/149‑1 (MQ=255)                              aCCTTGCCGTTGCGCCAGTTATGCAGAATTGGCCCGAACAGCCGGTGGTTCTCCAGCCATGCCGACAGGCGCGGTGAACTGCGTGTGGCGGCCCAGGCGGCCAGCAGGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGAc                                                                                                                         <  8:194034/149‑1 (MQ=255)                                             cAGTTATGCAGAATTGGCCCGAACAGCCGGTGGTTCTCCAGCCATGCCGACAGGCGCGGTGAACTGCGTGTGGCGGCCCAGGCGGCCAGCAGGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAg                                                                                                          <  4:60013/149‑1 (MQ=255)                                                  aTGCAGAATTGGCCCGAACAGCCGGTGGTTCTCCAGCCATGCCGACAGGCGCGGTGAACTGCGTGTGGCGGCCCAGGCGGCCAGCAGGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTc                                                                                                      <  8:193742/148‑1 (MQ=255)                                                     cAGAATTGGCCCGAACAGCCGGTGGTTCTCCAGCCATGCCGACAGGCGCGGTGAACTGCGTGTGGCGGCCCAGGCGGCCAGCAGGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACg                                                                                                   >  5:226278/1‑148 (MQ=255)                                                     cAGAATTGGCCCGAACAGCCGGTGGTTCTCCAGCCATGCCGACAGGCGCGGTGAACTGCGTGTGGCGGCCCAGGCGGCCAGCAGGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGt                                                                                                  <  7:300346/149‑1 (MQ=255)                                                       gAATTGGCCCGAACAGCCGGTGGTTCTCCAGCCATGCCGACAGGCGCGGTGAACTGCGTGTGGCGGCCCAGGCGGCCAGCAGGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATg                                                                                                                              <  2:72831/119‑1 (MQ=255)                                                       gAATTGGCCCGAACAGCCGGTGGTTCTCCAGCCATGCCGACAGGCGCGGTGAACTGCGTGTGGCGGCCCAGGCGGCCAGCAGGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATg                                                                                                                              >  1:72831/1‑119 (MQ=255)                                                           tGGCCCGAACAGCCGGTGGTTCTCCAGCCATGCCGACAGGCGCGGTGAACTGCGTGTGGCGGCCCAGGCGGCCAGCAGGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCa                                                                                            <  1:118688/149‑1 (MQ=255)                                                                     aGCCGGTGGTTCTCCAGCCATGCCGACAGGCGCGGTGAACTGCGTGTGGCGGCCCAGGCGGCCAGCAGGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCAGGATTCCATa                                                                                  >  5:293248/1‑149 (MQ=255)                                                                       ccGGTGGTTCTCCAGCCATGCCGACAGGCGCGGTGAACTGCGTGTGGCGGCCCAGGCGGCCAGCAGGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCAGGATTCCATAc                                                                                 >  2:163811/1‑148 (MQ=255)                                                                       ccGGTGGTTCTCCAGCCATGCCGACAGGCGCGGTGAACTGCGTGTGGCGGCCCAGGCGGCCAGCAGGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCAGGATTCCATAc                                                                                 >  3:368438/1‑148 (MQ=255)                                                                               tctcCAGCCATGCCGACAGGCGCGGTGAACTGCGTGTGGCGGCCCAGGCGGCCAGCAGGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCAGGATTCCATACGACAggcgg                                                                        >  2:207503/1‑149 (MQ=255)                                                                                ctcCAGCCATGCCGACAGGCGCGGTGAACTGCGTGTGGCGGCCCAGGCGGCCAGCAGGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCAGGATTCCATACGACAggcgg                                                                        <  1:207503/148‑1 (MQ=255)                                                                                     gCCATGCCGACAGGCGCGGTGAACTGCGTGTGGCGGCCCAGGCGGCCAGCAGGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCGCGTAGGCCAGGATTCCATACGACAGGCGGGCGAGt                                                                  >  5:271851/1‑149 (MQ=255)                                                                                      ccATGCCGACAGGCGCGGTGAACTGCGTGTGGCGGCCCAGGCGGCCAGCAGGATGAACTCGGTGgtcggcatggctggagaaccaccggctgttcgggccaattctgcataactggcgcaacggcaaggtgatccagcgccgggccaag                                                                 <  3:20316‑M2/149‑86 (MQ=255)                                                                                          gCCGACAGGCGCGGTGAACTGCGTGTGGCGGCCCAGGCGGCCAGCAGGATGAACTCGGTGgtcggcatggctggagaaccaccggctgttcgggccaattctgcataactggcgcaacggcaaggtgatccagcgccgggccaaggt                                                               <  4:328837‑M2/147‑88 (MQ=255)                                                                                            cGACAGGCGCGGTGAACTGCGTGTGGCGGCCCAGGCGGCCAGCAGGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCAGGATTCCATACGACAGGCGGGCGAGTTTCGAGc                                                           <  6:226278/149‑1 (MQ=255)                                                                                             gACAGGCGCGGTGAACTGCGTGTGGCGGCCCAGGCGGCCAGCAGGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCAGGATTCCATACGACAGGCGGGCGAGTTTCGAGCg                                                          <  4:368438/149‑1 (MQ=255)                                                                                                  gcgcGGTGAACTGCGTGTGGCGGCCCAGGCGGCCAGCAGGATGAACTCGGTGgtcggcatggctggagaaccaccggctgttcgggccaattctgcataactggcgcaacggcaaggtgatccagcgccgggccaaggtcagcgcaacc                                                     >  4:20316‑M2/1‑52 (MQ=255)                                                                                                  gcgcGGTGAACTGCGTGTGGCGGCCCAGGCGGCCAGCAGGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCAGGATTCCATACGACAGGCGGGCGAGTTTCGAGCggg                                                        <  6:38005/146‑1 (MQ=255)                                                                                                  gcgcGGTGAACTGCGTGTGGCGGCCCAGGCGGCCAGCAGGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCAGGATTCCATACGACAGGCGGGCGAGTTTCGAGCggg                                                        >  5:38005/1‑146 (MQ=255)                                                                                                  gcgcGGTGAACTGCGTGTGGCGGCCCAGGCGGCCAGCAGGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCAGGATTCCATACGACAGGCGGGCGAGTTTCGAGCGGGCTg                                                     >  3:38569/1‑149 (MQ=255)                                                                                                  gcgcGGTGAACTGCGTGTGGCGGCCCAGGCGGCCAGCAGGATGAACTCGGTGGTCAGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCAGGATTCCATACGACAGGCGGGCGAGTTTCGAGCGGGCTg                                                     >  5:166763/1‑149 (MQ=255)                                                                                                    gcgGTGAACTGCGTGTGGCGGCCCAGGCGGCCAGCAGGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCAGGATTCCATACGACAGGCGGGCGAGTTTCGAGCGGGCTGGt                                                   >  1:135943/1‑149 (MQ=255)                                                                                                     cgGTGAACTGCGTGTGGCGGCCCAGGCGGCCAGCAGGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCAGGATTCCa                                                                                    >  4:208783/1‑115 (MQ=255)                                                                                                     cgGTGAACTGCGTGTGGCGGCCCAGGCGGCCAGCAGGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCAGGATTCCa                                                                                    <  3:208783/115‑1 (MQ=255)                                                                                                     cgGTGAACTGCGTGTGGCGGCCCAGGCGGCCAGCAGGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCAGGATTCCATACGACAGGCGGGCGAGTTTCGAGCGGGCTGGTa                                                  <  1:163811/149‑1 (MQ=255)                                                                                                             tGCGTGTGGCGGCCCAGGCGGCCAGCAGGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCAGGATTCCATACGACAGGCGGGCGAGTTTCGAGCGGGCTGGTAGGGTCATg                                          >  5:202672/1‑149 (MQ=255)                                                                                                                gtgggccggcCCAGGCGGCCAGCAGGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCAGGATTCCATACGACAGGTGGGCGAGTTTCGAGCGGGCTGGTAGGGTCATGTtc                                       <  4:61680/143‑1 (MQ=255)                                                                                                                     gcggcCCAGGCGGCCAGCAGGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCAGGATTCCATACGACAGGCGGGCGAGTTTCGAGCGGGCTGGTAGGGTCATGTTCTCACt                                  >  1:186046/1‑149 (MQ=255)                                                                                                                       ggcCCAGGCGGCCAGCAGGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCCACCAGGCCCACCCCGAGGCACACGTAGGCCACGATTCCATACGACAGGCGGGCGAGTTTCGCGCGGGCTGGTAGGGTCATGTTCTCACTg                                 >  2:201940/1‑148 (MQ=255)                                                                                                                          ccAGGCGGCCAGCAGGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCAGGATTCCATACGACAGGCGGGCGAGTTTCGAGCGGGCTGGTAGGGTCATGTTCTCACTGCAt                              >  3:188673/1‑148 (MQ=255)                                                                                                                          ccAGGCGGCCAGCAGGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCAGGATTCCATACGACAGGCGGGCGAGTTTCGAGCGGGCTGGTAGGGTCATGTTCTCACTGCAt                              >  7:233478/1‑148 (MQ=255)                                                                                                                               cggcCAGCAGGATGAACTCGGTGGTCAGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCAGGATTCCATACGACAGGCGGGCGAGTTTCGAGCGGGCTGGTAGGGTCATGTTCTCACTGCATAAAACg                        <  6:166763/149‑1 (MQ=255)                                                                                                                                  ccAGCAGGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCAGGATTCCATACGACAGGCGGGCGAGTTTCGAGCGGGCTGGTAGGGTCATGTTCTCACTGCATAAAACGGtt                     <  6:202672/149‑1 (MQ=255)                                                                                                                                   cagcagGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCAGGATTCCATACGACAGGCGGGCGAGTTTCGAGCGGGCTGGTAGGGTCATGTTCTCACTGCATAAAACGGTTc                    >  5:207692/1‑149 (MQ=255)                                                                                                                                   cagcagGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCAGGATTCCATACGACAGGCGGGCGAGTTTCGAGCGGGCTGGTAGGGTCATGTTCTCACTGCATAAAACGGTTc                    >  1:195857/1‑149 (MQ=255)                                                                                                                                    agcagGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCAGGATTCCATACGACAGGCGGGCGAGTTTCGAGCGGGCTGGTAGGGTCATGTTCTCACTGCATAAAACGGTTCg                   <  2:186046/149‑1 (MQ=255)                                                                                                                                       agGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCAGGATTCCATACGACAGGCGGGCGAGTTTCGAGCGGGCTg                                                     <  4:212756/112‑1 (MQ=255)                                                                                                                                       agGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCAGGATTCCATACGACAGGCGGGCGAGTTTCGAGCGGGCTg                                                     >  3:212756/1‑112 (MQ=255)                                                                                                                                         gATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCAGGATTCCATACGACAGGCGGGCGAGTTTCGAGCggg                                                        <  4:339770/107‑1 (MQ=255)                                                                                                                                         gATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCAGGATTCCATACGACAGGCGGGCGAGTTTCGAGCggg                                                        >  3:339770/1‑107 (MQ=255)                                                                                                                                         gATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCAGGATTCCATACGACAGGCGGGCGAGTTTCGAGCGGGCTGGTAGGGTCATGTTCTCACTGCATAAAAc                         <  7:261560/138‑1 (MQ=255)                                                                                                                                         gATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCAGGATTCCATACGACAGGCGGGCGAGTTTCGAGCGGGCTGGTAGGGTCATGTTCTCACTGCATAAAAc                         >  8:261560/1‑138 (MQ=255)                                                                                                                                          tttaaCTTGGGGGTCGGAAAGCCGGGTATCACAATGGCGACCAGGCCGACCCCGAGGCTCACGTAGGCCAGGATTCCATAAGACAGGCGGGCGAGTTTCGAGCGGGCTGGTAGGGTCATGTTCTCACTGCATAAAACGGTTCGGCCAc              <  8:233478/145‑1 (MQ=255)                                                                                                                                           tGAACTCGGTGGTCGGCAACCCGGTAATCACAATCGCGACCAGGCCCACACCGAGGCTCACGAAGGCCAGGATTCCATACGACAGGCGCGCGACTTTCGAGCGCGCTCGTAGGGTCATGTTCACAATGCATAAAACGGTTCGGCCACCg            >  4:333711/1‑149 (MQ=255)                                                                                                                                                  ggtggtCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACGCCGAGGCTCACGTAGGCCAGGATTCCATACGACCGGCGGGCGAGTTTCGAGCGGGCTGGTAGGGTCATGTTCTCACTGCATAAAACGGTTCGGCCACCGGAggg       <  3:333711/147‑1 (MQ=255)                                                                                                                                                  ggtggtCGGCAAGCCGGCAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCAGGATTCCAAACGACAGGCGGGCGAGTTTCGAGCGGGCTGGTAGGGTCATGTTCTCACTGCATAAAACGGTTCGGCCACCGGAGGGGt     >  7:181586/1‑149 (MQ=255)                                                                                                                                                     ggtCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCAGGATTCCATACGACAGGCGGGCGAGTTTCGAGCGGGCTGGTAGGGTCATGTTCTCACTGCATAAAACGGTTCGGCCACCGGAGGGGTGGc  >  3:52482/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     TTGCGCTGACCTTGGCCCGGCGCTGGATCACCTTGCCGTTGCGCCAGTTATGCAGAATTGGCCCGAACAGCCGGTGGTTCTCCAGCCATGCCGACAGGCGCGGTGAACTGCGTGTGGCGGCCCAGGCGGCCAGCAGGATGAACTCGGTGGTCGGCAAGCCGGGAATCACAATGGCGACCAGGCCCACCCCGAGGCTCACGTAGGCCAGGATTCCATACGACAGGCGGGCGAGTTTCGAGCGGGCTGGTAGGGTCATGTTCTCACTGCATAAAACGGTTCGGCCACCGGAGGGGTGGC  >  NC_002947/1144430‑1144726

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.