New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2418682 =	37 (0.620)	4 (0.070)	4/252	NT	9.8%	coding (1717/1764 nt)	PP_2119	ABC transporter permease/ATP‑binding protein
	?	NC_002947	2418728 =	39 (0.680)					coding (1763/1764 nt)	PP_2119	ABC transporter permease/ATP‑binding protein

GCCCATCGCCTGGCCACGGTACAGCATGCCGAGCGCATCGCGGTCATCGACCAGGGCCGGCTGGTGGCGGTGGGCACCCACCGTCAGTTGATTGAGGACAGCCCGTTGTATGCGCGGCTGGCAGCGCTGCAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGATTTGCCTCAACTGTTGCGTAAGTGCTCGACCTGGCTGCCATTGCGTGATGGCAGCTTTTTTTTGGCCTGCCAGTAATGAGGCTGTACAGCGGCCTCAGC  >  NC_002947/2418583‑2418873                                                                                                                                                  |                                                                                                                                                  gCCCATCGCCTGGCCACGGTACAGCATGCCGAGCGCATCGCGGTCATCGACCAGGGCCGGCTGGTGGCGGTGGGCACCCACCGTCAGTTGATTGAGGACAGCCCGTTGTATGCGCGGCTGGCAGCGCTGCAATTCACCACGGGCTAGCg                                                                                                                                                <  6:136403/149‑1 (MQ=255)  ccatcacgcaatggcagccaggtcgagcacttacgcaacagttgaggcaaatcttctcaggcaattactacagaaatgttacaaggccacgacacgctAGCCCGTTGTATGCGCGGCTGGCAGCGCTGCAATTCACCACGGGCTAGc                                                                                                                                                 >  3:107173‑M1/99‑147 (MQ=255)        gCCTGGCCACGGTACAGCATGCCGAGCGCATCGCGGTCATCGACCAGGGCCGGCTGGTGGCGGTGGGCACCCACCGTCAGTTGATTGAGGACAGCCCGTTGTATGCGCGGCTGGCAGCGCTGCAATTCACCACGGGCTAGCGTGTCGTg                                                                                                                                         >  2:228288/1‑149 (MQ=255)             gCCACGGTACAGCATGCCGAGCGCATCGCGGTCATCGACCAGGGCCGGCTGGTGGCGGTGGGCACCCACCGTCAGTTGATTGAGGACAGCCCGTTGTATGCGCGGCTGGCAGCGCTGCAATTCACCACGGGCTAGCGTGTCGTGGCCtt                                                                                                                                    >  5:111140/1‑149 (MQ=255)               cACGGTACAGCATGCCGAGCGCATCGCGGACATCGACCAGGGCCGGCTGGTGGCGGTGGGCACCCACCGTCAGTTGATTGAGGACAGCCCGTTGTATGCGCGGCTGGCAGCGCTGCATTTCACCACGGGCTAGCGTGTCGTGGCCTTg                                                                                                                                   >  1:216706/1‑148 (MQ=255)                 cGGTACAGCATGCCGAGCGCATCGCGGTCATCGACCAGGGCCGGCTGGTGGCGGTGGGCACCCACCGTCAGTTGATTGAGGACAGCCCGTTGTATGCGCGGCTGGCAGCGCTGCAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTaa                                                                                                                                <  2:105845/149‑1 (MQ=255)                   gTACAGCATGCCGAGCGCATCGCGGTCATCGACCAGGGCCGGCTGGTGGCGGTGGGCACCCACCGTCAGATGATTGAGGACAGCCCGTTGTATGCGCGGCTGGCAGCGCTGCAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTAACa                                                                                                                              >  1:169773/1‑149 (MQ=255)                          aTGCCGAGCGCATCGCGGTCATCGACCAGGGCCGGCTGGTGGCGGTGGGCACCCACCGTCAGTTGATTGAGGACAGCCCGTTGTATGCGCGGCTGGCAGCGCTGCAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTAACATTTCTg                                                                                                                        >  1:83685/1‑148 (MQ=255)                             ccGAGCGCATCGCGGTCATCGACCAGGGCCGGCTGGTGGCGGTGGGCACCCACCGTCAGTTGATTGAGGACAGCCCGTTGTATGCGCGGCTGGCAGCGCTGCAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTAACATTTCTgaag                                                                                                                     >  4:31359/1‑148 (MQ=255)                                      tCGCGGTCATCGACCAGGGCCGGCTGGTGGCGGTGGGCACCCACCGTCAGTTGATTGATGCCAGCCCGTTGTATGCGCGGCTGGCAGCGCTGCAATTCACCACCGGCTAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTg                                                                                                           <  2:272766/149‑1 (MQ=255)                                              aTCGACCAGGGCCGGCTGGTGGCGGTGGGCACCCACCGTCAGTTGATTGAGGACAGCCCGTTGTATGCGCGGCTGGCAGCGCTGCAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTAACATTTCTGAAGTAATTGCCTGAGAAGAtt                                                                                                   <  3:31359/149‑1 (MQ=255)                                               tCGACCAGGGCCGGCTGGTGGCGGTGGGCACCCACCGTCAGTTGATTGAGGACAGCCCGTTGTATGCGCGGCTGGCAGCGCTGCATTTCACCACGGGCTAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGAttt                                                                                                  <  2:216706/149‑1 (MQ=255)                                               tCGACCAGGGCCGGCTGGTGGCGGTGGGCACCCACCGTCAGTTGATTGAGGAAAGCCCGTTGTATGCGCGGCTGGCAGCGCTGCAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGAttt                                                                                                  >  5:18760/1‑149 (MQ=255)                                                  aCCAGGGCCGGCTGGTGGCGGTGGGCACCCACCGTCAGTTGATTGAGGACAGCCCGTTGTTTGCGCGGCTGGCAGCGCTGAAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGATTTGcc                                                                                               <  7:94585/149‑1 (MQ=255)                                                      gggCCGGCTGGTGGCGGTGGGCACCCACCGTCAGTTGATTGAGGACAGCCCGTTGTATGCGCGGCTGGCAGCGCTGCAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTa                                                                                                                                 <  3:28225/111‑1 (MQ=255)                                                      gggCCGGCTGGTGGCGGTGGGCACCCACCGTCAGTTGATTGAGGACAGCCCGTTGTATGCGCGGCTGGCAGCGCTGCAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTa                                                                                                                                 >  4:28225/1‑111 (MQ=255)                                                                 tggCGGTGGGCACCCACCGTCAGTTGATTGAGGACAGCCCGTTGTATGCGCGGCTGGCAGCGCTGCAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGATTTGCCTCAACTGTTGCGTaa                                                                                <  4:173793/149‑1 (MQ=255)                                                                 tggCGGTGGGCACCCACCGTCAGTTGATTGAGGACAGCCCGTTGTATGCGCGGCTGGCAGCGCTGCAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGATTTGCCTCAACTGTTGCGTaa                                                                                >  3:59414/1‑149 (MQ=255)                                                                      gTGGGTGCCCACCGTCAGTTGATTGAGGACAGCCCGTTGTATGCGCGGCTGGCAGCGCTGCAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAAATGCCTGAGAAGATTTGCCTCAACTGTTGCGTAAGTGCt                                                                           >  5:190584/1‑149 (MQ=255)                                                                                    tCAGTTGATTGAGGACAGCCCGTTGTATCCGCGGCTGGCAGCGCTGCAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGATTTGCCTCAACTGTTGCGTAAGTGCTCGACCTGGCTGCCa                                                             >  1:175870/1‑149 (MQ=255)                                                                                       gTTGATTGAGGACAGCCCGTTGTATGCGCGGCTGGCAGCGCTGCAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGAtt                                                                                                   <  1:85099/108‑1 (MQ=255)                                                                                       gTTGATTGAGGACAGCCCGTTGTATGCGCGGCTGGCAGCGCTGCAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGAtt                                                                                                   >  2:85099/1‑108 (MQ=255)                                                                                          gattgaGGACAGCCCGTTGTATGCGCGGCTGGCAGCGCTGCAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGATTTGCCTCAACTGTTGCGTAAGTGCTCGACCTGGCTGCCATTGCGt                                                       >  4:262808/1‑149 (MQ=255)                                                                                          gattgaGGACAGCCCGTTGTATGCGCGGCTGGCAGCGCTGCAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGATTTGCCTCAACTGTTGCGTAAGTGCTCGACCTGGCTGCCATTGCGt                                                       >  3:68504/1‑149 (MQ=255)                                                                                               aGGACAGCCCGTTGTATGCGCGGCTGGCAGCGCTGCAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGATTTGCCTCAACTGTTGCGTAAGTGCTCGACCTGGCTGCCATTGCGTGATg                                                   <  3:298691/148‑1 (MQ=255)                                                                                               aGGACAGCCCGTTGTATGCGCGGCTGGCAGCGCTGCAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCT‑‑GAAGATTTGCCTCAACTGTTGCGTAAGTGCTCGACCTGGCTGCCATTGCGTGATGGCa                                                <  2:83685/149‑1 (MQ=255)                                                                                                 gctagcccgtggtgaattgcagcgctgccagccgcgcatacaacgggctAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGATTTGCCTCAACTGTTGCGTAAGTGCTCGACCTGGCTGCCATTGCGTGATgg                                                  >  3:107173‑M2/50‑147 (MQ=255)                                                                                                 gACAGCCCGTTGTATGCGCGGCTGGCAGCGCTGCAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGATTTGCCTCAACTGTTGCGTAAGTGCTCGACCTGGCTGCCATTGCGTGATgg                                                  >  3:28194/1‑147 (MQ=255)                                                                                                  aCAGCCCGTTGTATGCGCGGCTGGCAGCGCTGCAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGATTTGCCTCAACTGTTGCg                                                                                   >  1:138713/1‑113 (MQ=255)                                                                                                  aCAGCCCGTTGTATGCGCGGCTGGCAGCGCTGCAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGATTTGCCTCAACTGTTGCg                                                                                   <  2:138713/113‑1 (MQ=255)                                                                                                     gcccgtggtgaattgcagcgctgccagccgcgcatacaacgggctAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGATTTGCCTCAACt                                                                                         <  4:283505‑M2/59‑1 (MQ=255)                                                                                                     gcccgtggtgaattgcagcgctgccagccgcgcatacaacgggctAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGATTTGCCTCAACt                                                                                         >  3:283505‑M2/46‑104 (MQ=255)                                                                                                     GCCCGTTGTATGCGCGGCTGGCAGCGCTGCAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGATTTGCCTCAACTGTTGCGTAAGTGCTCGACCTGGCTGCCATTGCGTGATGGCAGCtt                                            <  4:34501‑M1/149‑1 (MQ=255)                                                                                                      CCCGTTGTATGCGCGGCTGGCAGCGCTGCAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTATCATTTCAGTAGTAATTGCCTGAGAAGATTTGCCTCAACTGTTGCGTAAGTGCTCGACCTGGCTGACTGTGCGTGATGGCAGCttt                                           <  5:368953‑M1/149‑1 (MQ=255)                                                                                                       CCGTTGTATGCGCGGCTGGCAGCGCTGCAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGATTTGCCTCAACTGTTGCGTAAGTGCTCGACCTGGCTGCCATTGCGTGATGGCAGCtttt                                          <  3:191776‑M1/149‑1 (MQ=255)                                                                                                        CGTTGTATGCGCGGCTGGCAGCGCTGCAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGATTTGCCTCAACTGTTGCGTAAGTGCTCGACCTGGCTGCCATTGCGTGATGGCAGCttttt                                         <  8:99153‑M1/149‑1 (MQ=255)                                                                                                            gtgaattgcagcgctgccagccgcgcatacaacgggctAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGATTTGCCTCAACTGTTGCGTAAGTGCTCGACCTGGCTGCCATTGCGTGATGGCAGCTTTTTTTTg                                     <  4:107173‑M2/111‑1 (MQ=255)                                                                                                            gTATGCGCGGCTGGCAGCGCTGCAATTCACCACGGTCTAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGATTTGCCTCAACTGTTGCGTAAGTGCTCGACCTGGCTGCCATTGCGTGATGGCAGCtttttttt                                      <  7:328472/148‑1 (MQ=255)                                                                                                            gTATGCGCGGCTGGCAGCGCTGCAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGATTTGCCTCAACTGTTGCGTAAGTGCTCGACCTGGCTGCCATTGCGTGATGGCAGCtttttttt                                      <  3:262808/148‑1 (MQ=255)                                                                                                            gTATGCGCGGCTGGCAGCGCTGCAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGATTTGCCTCAACTGTTGCGTAAGTGCTCGACCTGGCTGCCATTGCGTGATGGCAGCtttttttt                                      <  6:140921/148‑1 (MQ=255)                                                                                                             tATGCGCGGCTGGCAGCGCTGCAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGATTTGCCTCAACTGTTGCGTAAGTGCTCGACCTGGCTGCCATTGCGTGATGGCAGCTTTTTTTTgg                                    >  1:65266/1‑149 (MQ=255)                                                                                                             tATGCGCGGCTGGCAGCGCTGCAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGATTTGCCTCAACTGTTGCGTAAGTGCTCGACCTGGCTGCCATTGCGTGATGGCAGCTTTTTTTTg                                     <  6:111140/148‑1 (MQ=255)                                                                                                                    ggCTGGCAGCGCTGCAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGATTTGCCTCAACTGTTGCGTAAGTGCTCGACCTGGCTGCCATTGCGTGATGGCAGCTTTTTTTTGGCCTGCCa                             <  4:59414/149‑1 (MQ=255)                                                                                                                         gCAGCGCTGCAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGATTTGCCTCAACTGTTGCGTAAGTGCTCGACCTGGCTGCCATTGCGTGATGGCAGCTTTTTTTTGGCCTGCCAGTAAt                        <  2:65266/149‑1 (MQ=255)                                                                                                                             cgcTGCAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGATTTGCCTCAACTGTTGCGTAAGTGCTCGACCTGGCTGCCATTGCGTGATGGCAGCTTTTTTTTGGCCTGCCAGTAATGAgg                    >  5:286542/1‑149 (MQ=255)                                                                                                                               cTGCAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGATTTGCCTCAACTGTTGCGTAAGTGCTCGACCTGGCTGCCATTGCGTGATGGCAGCTTTTTTTTGGCCTGCCAGTAATGAGGCt                  <  1:228288/149‑1 (MQ=255)                                                                                                                                tGCAATTCACCACGGGCTAGCGTGTCGTGGCCGTGTAACATTTCTGTAGTAATTGCCTGAGAAGATTTGCCTCACCTGTTGCGTAAGTGCTCGACCTGGCTGCCATTGCGAGATGGCAGCTTTTTTTTGGCCTGCCAGTAATGAGGCTg                 >  2:264922/1‑149 (MQ=255)                                                                                                                                  cAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGATTTGCCTCAACTGTTGCGTAAGAGATCGACCTGGCTGCCATTGCGTGATGGCAGCTTTTTTTTGGCCTGCCAGTAATGAGGCTGTa               >  6:275502/1‑149 (MQ=255)                                                                                                                                    aTTCACCACGGGCTAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGATTTGCCTCAACTGTTGCGTAAGTGCTCGACCTGGCTGCCATTGCGTGATGGCAGCTTTTTTTTGGCCTGCCAGTAATGAGGCTGTa               >  5:52860/1‑147 (MQ=255)                                                                                                                                         ccacGGGCTAGCGTGTCGTGTCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGATTTGCCTGAACTGTTGCGTAAGTGCTCGACCTGGCTGCCATTGCGTGATGGCAGCTTTTTTTTGGCCTGCCAGTAATGAGGCTGTACAGCGGc        <  2:169773/149‑1 (MQ=255)                                                                                                                                          cacGGGCTAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGATTTGCCTCAACTGTTGCGTAAGTGCTCGACCTGGCTGCCATTGCGTGATGGCAGCTTTTTTTTGGCCTGCCAGTAATGAGGCTGTACAGCGGcc       >  5:99150/1‑149 (MQ=255)                                                                                                                                             gggctAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGATTTGCCTCAACTGTTGCGTAAGTGCTCGACCTGGCTGCCATTGCGTGATGGCAGCTTTTTTTTGGCCTGCCAGTAATGAGGCTGTACAGCGGCCTCa    <  3:34501‑M2/144‑1 (MQ=255)                                                                                                                                               gctAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGATTTGCCTCAACTGTTGCGTAAGTGCTCGACCTGGCTGCCATTGCGTGATGGCAGCTTTTTTTTGGCCTGCCAGTAATGAGGCTGTACAGCGGCCTCAGc  <  4:191776‑M2/146‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                  GCCCATCGCCTGGCCACGGTACAGCATGCCGAGCGCATCGCGGTCATCGACCAGGGCCGGCTGGTGGCGGTGGGCACCCACCGTCAGTTGATTGAGGACAGCCCGTTGTATGCGCGGCTGGCAGCGCTGCAATTCACCACGGGCTAGCGTGTCGTGGCCTTGTAACATTTCTGTAGTAATTGCCTGAGAAGATTTGCCTCAACTGTTGCGTAAGTGCTCGACCTGGCTGCCATTGCGTGATGGCAGCTTTTTTTTGGCCTGCCAGTAATGAGGCTGTACAGCGGCCTCAGC  >  NC_002947/2418583‑2418873

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.