New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2829353	40 (0.660)	4 (0.070)	4/254	NT	9.2%	coding (292/339 nt)	PP_2481	hypothetical protein
	?	NC_002947	= 2829365	41 (0.710)					coding (304/339 nt)	PP_2481	hypothetical protein

TCTTCGTCGAGCGCTGGGCCAGCCATGAGGCGATAGCGCGCCATCGGCAGATGCCACATTACACGGCCATGGCCAATGCCTTGGGCGAGCTGCTAAGCGATCGTCAGGTTTATGTGCTTGAAGCGCTGGCGGAGGACATCGAACCCGCCATTGATCCCCGTACGGGCGTTGTCGGGTGATAGTTGATCGACATGGTCGGCGTTTTCGCAAACTTCGTCTGAGCCTGACTGCCGCATGCAATTACGCCTGCACCTACTGTGTGGCCGATGGCCGTCGCTTGGTGGCCGCACGC  >  NC_002947/2829222‑2829513                                                                                                                                                |                                                                                                                                                     tCTTCGTCGATCGCTGGGCCAGCCATGAGGCGATAGCGCGCCATCTGGAGATGCCAGATTACACGGCCATGGCCAATGCCTTGGGGGAGCTGCTAAGCGATCGTCAGGTTTATGTGCTTGAAGCGCTGGCGGAGGACATCGAACccgc                                                                                                                                                  >  4:185954‑M2/1‑144 (MQ=255) tCTTCGTCGAGCGCTGGGCCAGCCATGAGGCGATAGCGCGCCATCGGCAGATGCCACATTACACGGCCATGGCCAATGCCTTGGGCGAGCTGCTAAGCGATCGTCAGGTTTATGTGCTTGAAGCGCTGGCGGAGGACATCGAACccgc                                                                                                                                                  <  4:207547‑M2/148‑5 (MQ=255)  catcgtcgagCGCTGGGCCAGCCATGAGGCGATAGCGCGCCATCGGCAGATGCCACATTACACGGCCATGGCCAATGCCTTGGGCGAGCTGCTAAGCGATCGTCAGGTTTATGTGCTTGAAGCGCTGGCGGAGGAAATCGAACccgcca                                                                                                                                                <  7:240464‑M2/147‑7 (MQ=255)         gAGCGCTGGGCCAGCCATGAGGCGATAGCGCGCCATCGGCAGATGCCACATTACACGGCCATGGCCAATGCCTTGGGCGAGCTGCTAAGCGATCGTCAGGTTTATGTGCTTGAAGCGCTGGCGGAGGACATCGAACCCGCCATTGATcc                                                                                                                                         >  2:110992/1‑149 (MQ=255)          aGCGCTGGGCCAGCCATGAGGCGATAGCGCGCCATCGGCAGATGCCACATTACACGGCCATGGCCAATGCCTTGGGCGAGCTGCTAAGCGATCGTCAGGTTTATGTGCTTGAAGCGCTGGCGGAGGACATCGAACCCGCCATTGATccc                                                                                                                                        <  3:324437/149‑1 (MQ=255)                  gccagccaTGAGGCGATAGCGCGCCATCGGCAGATGCCACATTACATGGCCATGGCCAATGCCTTGGGCGAGCTGCTAAGCGATCGTCAGGTTTATGTGCTTGAAGCGCTGGCGGAGGACATCGAACCCGCCATTGATCCCCGTACggg                                                                                                                                >  4:223833/1‑149 (MQ=255)                    cagccaTGAGGCGATAGCGCGCCATCGGCAGATGCCACATTACACGGCCATGGCCAATGCCTTGGGCGAGCTGCTAAGCGATCGTCAGGTTTATGTGCTTGAAGCGCTGGCGGAGGACATCGAACCCGCCATTGATCCCCGTACGGGCg                                                                                                                              >  7:337189/1‑149 (MQ=255)                    cagccaTGAGGCGATAGCGCGCCATCGGCAGATGCCACATTACACGGCCATGGCCAATGCCTTGGGCGAGCTGCTAAGCGATCGTCAGGTTTATGTGCTTGAAGCGCTGGCGGAGGACATCGAACCCGCCATTGATCCCCGTACGGGCg                                                                                                                              <  5:48690/149‑1 (MQ=255)                      gccaTGAGGCGATAGCGCGCCATCGGCAGATGCCACATTACACGGCCATGGCCAATGCCTTGGGCGAGCTGCTAAGCGATCGTCAGGTTTATGTGCTTGAAGCGCTGGCGGAGGACATCGAACCCGCCATTGATCCCCGTACGGGCGtt                                                                                                                            <  6:352269/149‑1 (MQ=255)                        caTGAGGCGATAGCGCGCCATCGGCAGATGCCACATTACACGGCCATGGCCAATGCCTTGGGCGAGCTGCTAAGCGATCGTCAGGTTTATGTGCTTGAAGCGCTGGCGGAGGACATCGAACCCGCCATTGATCCCCGTACGGGCGTTGt                                                                                                                          <  2:353499/149‑1 (MQ=255)                          tGAGGCGATAGCGCGCCATCGGCAGATGCCACATTACACGGCCATGGCCAATGCCTTGGGCGAGCTGCTAAGCGATCGTCAGGTTTATGTGCTTGAAGCGCTGGCGGGTGCGATGTCCTccgccagcgcttcaagcacataaacctgac                                                                                                                        >  2:159664‑M2/1‑119 (MQ=255)                              gCGATAGCGCGCCATCGGCAGATGCCACATTACACGGCCATGGCCAATGCCTTGGGCGAGCTGCTAAGCGATCGTCAGGTTTATGTGCTTGAAGCGCTGGCGGAGGACATCGAACCCGCCATTGATCCCCGTACGGGCGTTGTCGGGt                                                                                                                     >  6:374228/1‑148 (MQ=255)                                 aTAGCGCGCCATCGGCAGATGCCACATTACACGGCCATGGCCAATGCCTTGGGCGAGCTGCTAAGCGATCGTCAGGTTTATGTGCTTGAAGCGCTGGCGGAGGACATCGAACCCGCCATTGATCCCCGTACGGGCGTTGTCGGGTGATa                                                                                                                 <  4:8362/149‑1 (MQ=255)                                  tAGCGCGCCATCGGCAGATGCCACATTACACGGCCATGGCCAATGCCTTGGGCGAGCTGCTAAGCGATCGTCAGGTTTATGTGCTTGAAGCGCTGGCGGAGGACATCGAACCCGCCATTGATCCCCGTACGGGCGTTGTCGGGTGATa                                                                                                                 <  6:254506/148‑1 (MQ=255)                                        gcCATCGGCAGATGCCACATTACACGGCCATGGCCAATGCCTTGGGCGAGCTGCTAAGCGATCGTCAGGTTTATGTGCTTGAAGCGCTGGCGGAGGACATCGAACCCGCCATTGATCCCCGTACGGTCGTTGTCGGGTGATAGTTGATc                                                                                                          <  2:216060/149‑1 (MQ=255)                                        gcCATCGGCAGATGCCACATTACACGGCCATGGCCAATGCCTTGGGCGAGCTGCTAAGCGATCGTCAGGTTTATGTGCTTGAAGCGCTGGCGGAGGACATCGAACCCGCCATTGATCCCCGTACGGGCGTTGTCGGGTGATAGTTGATc                                                                                                          <  8:337189/149‑1 (MQ=255)                                           aTCGGCAGATGCCACATTACACGGCCATGGCCAATGCCTTGGGCGAGCTGCTAAGCGATCGTCAGGTTTATGTGCTTGAAGCGCTGGCGGAGGACATCGAACCCGCCATTGATCCCCGTACGGGCGTTGTCGGGTGATAGTTGATCGAc                                                                                                       <  4:277925/149‑1 (MQ=255)                                                 ataTGCCACATTACTCGGCAATGGCCAATGCCTTGGGCGAGCTGCTAAGCGATGGTCTGGTTTATGTGCTTGAAGCGCTGGCTGAGGACATCGAACGCGCCATTGATCGCCGTACGGGCGTTGTCGGGTGTTAGTTGATCGACTTGGt                                                                                                  <  8:240464/146‑1 (MQ=255)                                                    tGCCACATTACACGGCCATGGCCAATGCCTTGGGCGAGCTGCTAAGCGATCGTCAGGTTTATGTGCTTGAAGCGCTGGCGGAGGACATCGAACCCGCCATTGATCCCCGTACGGGCGTTGTCGGGTGATAGTTGATCGACATGGTCGGc                                                                                              <  3:108322/149‑1 (MQ=255)                                                        acaTTACACGGCCATGGCCAATGCCTTGGGCGAGCTGCTAAGCGATCGTCAGGTTTATGTGCTTGAAGCGCTGGCGGAGGACATCGAACCCGCCATTGATCCCCGTACGGGCGTTGTCGGGTGATAGTTGATCGACATGGTCGGCGttt                                                                                          >  7:98281/1‑149 (MQ=255)                                                         ctttACACGGCCATGGCCAATGCGTTGGGCGAGCTGCTAAGCGATCGTCAGGTTTATGTGCTTGATGCGCTGGCGGAGGACATTTAACCCGCCATTGATCCCCGTACGGGCGTTGTCGGGGGATAGTTGATCGACATGGTCGGCGtttt                                                                                         <  1:110992/147‑1 (MQ=255)                                                         caTTACACGGCCATGGCCAATGCCTTGGGCGAGCTGCTAAGCGATCGTCAGGTTTCTGTGCTTGCAGCGCTGGCGGCGGACATCGAACCCGCCATTGATCCCCGTACGGGCGTTGTCGGGTGATAGTTGATCGACATGGTCGGCGtttt                                                                                         <  3:276048/149‑1 (MQ=255)                                                          aTTACACGGCCATGGCCAATGCCTTGGGCGAGCTGCTAAGCGATCGTCAGGTTTATGTGCTTGAAGCGCTGGCGGAGGACATCGAACCCGCCATTGATCCCCGTACGGGCGTTGTCGGGTGATAGTTGATCGACATGGTCGGCGTTTTc                                                                                        <  3:207547/149‑1 (MQ=255)                                                              cacGGCCATGGCCAATGGCTTGGGCGAGCTGCTAAGCGATCGTCAGGTTTATGTGCTTGAAGCGCTGGCGGAGGACATCGAACCCGCCATTGATCCCCGTACGGGCGTTGTCGGGTGATAGTTGATCGACATGGTCGGCGTTTTCGCaa                                                                                    <  3:74124/149‑1 (MQ=255)                                                                cGGCCATGGCCAATGCCTTGGGCGAGCTGCTAAGCGATCGTCAGGTTTATGTGCTTGAAGCGCTGGCGGAGGACATCGAACCCGCCATTGATCCCCGTACGGGCGTTGTCGGGTGATAGTTGATCGACATGGTCGGCGTTTTCGCAAAc                                                                                  <  5:374228/149‑1 (MQ=255)                                                                 ggCCATGGCCAATGCCTTGGGCGAGCTGCTAAGCGATCGTCAGGTTTATGTGCTTGAAGCGCTGGCGGAGGACATCGAACCCGCCATTGATCCCCGTACGGGCGTTGTCGGGTGATAGTTGATCGACATGGTCGGCGTTTTCGCAAACt                                                                                 >  3:93360/1‑149 (MQ=255)                                                                                       gAGCTGCTAAGCGATCGTCAGGTTTATGTGCTTGAAGCGCTGGCGGAGGACATCGAACCCGCCATTGATCCCCGTACGGGCGTTGTCGGGTGATAGTTGATCGACATGGTCGGCGTTTTCGCAAACTTCGTCTGAGCCTGACTGCCGCa                                                           >  6:268344/1‑149 (MQ=255)                                                                                         gctgctAAGCGATCGTCAGGTTTATGTGCTTGAAGCGCTGGCGGAGGACATCGAACCCGCCATTGATCCCCGTACGGGCGTTGTCGGGTGATAGTTGATCGACATGGTCGGCGTTTTCGCAAACTTCGTCTGAGCCTGACTGCCGCATg                                                         <  7:291321/149‑1 (MQ=255)                                                                                             ctAAGCGATCGTCAGGTTTATGTGCTTGAAGCGCTGGCGGAGGACATCGAACCCGCCATTGATCCCCGTACGGGCGTTGTCGGGTGATAGTTGATCGACATGGTCGGCGTTTTCGCAAACTTCGTCTGAGCCTGACTGCCGCATGCAAt                                                     >  4:142162/1‑149 (MQ=255)                                                                                               aaGCGATCGTCAGGTTTATGTGCTTGAAGCGCTGGCGGAGGACATCGAACCCGCCATTGATCCCCGTACGGGCGTTGTCGGGTGATAGTTGATCGACATGGTCGGCGTTTTCGCAAACTTCGTCTGAGCCTGACTGCCGCATGCAATTa                                                   >  8:210233/1‑149 (MQ=255)                                                                                                aGCGATCGTCAGGTTTATGTGCTTGAAGCGCTGGCGGAGGACATCGAACCCGCCATTGATCCCCGTACGGGCGTTGTCGGGTGATAGTTGATCGACATGGTCGGCGTTTTCGCAAACTTCGTCTGAg                                                                        >  8:40180/1‑127 (MQ=255)                                                                                                aGCGATCGTCAGGTTTATGTGCTTGAAGCGCTGGCGGAGGACATCGAACCCGCCATTGATCCCCGTACGGGCGTTGTCGGGTGATAGTTGATCGACATGGTCGGCGTTTTCGCAAACTTCGTCTGAg                                                                        <  7:40180/127‑1 (MQ=255)                                                                                                aGCGATCGTCAGGTTTATGTGCTTGAAGCGCTGGCGGAGGACATCGAACCCGCCATTGATCCCCGTACGGGCGTTGTCGGGTGATAGTTGATCGACATGGTCGGCGTTTTCGCAAACTTCGTCTGAGCCTGACTGCCGCATGCAATTAc                                                  >  3:215369/1‑149 (MQ=255)                                                                                                        tCAGGTTTATGTGCTTGAAGCGCTGGCGGAGGACATCGAACCCGCCATTGATCCCCGTACGGGCGTTGTCGGGTGATAGTTGATCGACATGGTCGGCGTTTTCGCAAACTTCGTCTGAGCCTGACTGCCGCATGCAATTACGCCTGCAc                                          >  1:160139/1‑149 (MQ=255)                                                                                                                   tgCTTGAAGCGCTGGCGGAGGACATCGAACccgccagcgcttcaagcacataaacctgacgatcgcttagcagctcgcccaaggcattggccatggccgtgtaatgt                                                                         >  8:334556‑M2/1‑30 (MQ=255)                                                                                                                   tgCTTGAAGCGCTGGCGGAGGACATCGAACccgccagcgcttcaagcacataaacctgacgatcgcttagcagctcgcccaaggcattggccatggccgtgtaatgt                                                                         <  7:334556‑M2/107‑78 (MQ=255)                                                                                                                     cTTGAAGCGCTGGCGGAGGACATCGAACCCGCCATTGATCCCCGTACGGGCGTTGTCGGGTGATAGTTGATCGACATGGTCGGCg                                                                                             <  6:300607/85‑1 (MQ=255)                                                                                                                     cTTGAAGCGCTGGCGGAGGACATCGAACCCGCCATTGATCCCCGTACGGGCGTTGTCGGGTGATAGTTGATCGACATGGTCGGCg                                                                                             >  5:300607/1‑85 (MQ=255)                                                                                                                     cTTGAAGCGCTGGCGGAGGACATCGAACCCGCCATTGATCCCCGTACGGGCGTTGTCGGGTGATAGTTGATCGACATGGTCGGCGTTTTCGCAAACTTCGTCTGAGCCTGACTGCCGCATGCAATTACGCCTGCACCTACTGTGTGGcc                             >  3:11317/1‑149 (MQ=255)                                                                                                                        gAAGCGCTGGCGGAGGACATCGAACCCGCCATTGATCCCCGTACGGGCGTTGTCGGGTGATAGTTGATCGACATGGTCGGCGTTTTCGCAAACTTCGTCTGAGCCTGACTGCCGCATGCAATTACGCCTGCACCTACTGTGTGGCCGa                           <  3:153198/148‑1 (MQ=255)                                                                                                                        gAAGCGCTGGCGGAGGACATCGAACCCGCCATTGATCCCCGTACGGGCGTTGTCGGGTGATAGTTGATCGACATGGTCGGCGTTTTCGCAAACTTCGTCTGAGCCTGACTGCCGCATGCAATTACGCCTGCACCTACTGTGTGGCCGAt                          >  1:347867/1‑149 (MQ=255)                                                                                                                        gAAGCGCTGGCGGAGGACATCGAACCCGCCATTGATCCCCGTACGGGCGTTGTCGGGTGATAGTTGATCGACATGGTCGGCGTTTTCGCAAACTTCGTCTGAGCCTGACTGCCGCATGCAATTACGCCTGCACCTACTGTGTGGCCGAt                          >  1:101114/1‑149 (MQ=255)                                                                                                                         aaGCGCTGGCGGAGGACATCGAACCCGCCATTGATCCCCGTACGGGCGTTGTCGGGTGATAGTTGATCGACATGGTCGGCGTTTTCGCAAACTTCGTCTGAGCCTGACTGCCGCATGCAATTACGCCTGCACCTACTGTGTGGCCGAt                          <  7:248053/148‑1 (MQ=255)                                                                                                                              cTGGCGGAGGACATCGAACccgccagcgcttcaagcacataaacctgacgatcgcttagcagctcgcccaaggcattggccatggccgtgtaatgtggcatctgccgatggcgcgctatcgcctcatggctggcccagcgctcgacg                      <  8:210803‑M2/147‑129 (MQ=255)                                                                                                                                         cATCGAACCCGCCATTGATCCCCGTACGGGCGTTGTCGGGTGATAGTTGATCGACATGGTCGGCGTTTTCGCAAACTTCGTCTGAGCCTGACTGCCGCATGCAATTACGCCTGCACCTACTGTGTGGCCGATGGCCGTCGCTTGGTGGc         >  4:71145/1‑149 (MQ=255)                                                                                                                                          aTCGAACCCGCCATTGATCCCCGTACGGGCGTTGTCGGGTGATAGTTGATCGACATGGTCGGCGTTTTCGCAAACTTCGTCTGAGCCTGACTGCCGCATGCAATTACGCCTGCACCTACTGTGTGGCCGATGGCCGTCGCTTGGTGGcc        >  8:181429/1‑149 (MQ=255)                                                                                                                                          aTCGAACCCGCCATTGATCCCCGTACGGGCGTTGTCGGGTGATAGTTGATCGACATGGTCGGCGTTTTCGCAAACTTCGTCTGAGCCTGACTGCCGCATGCAATTACGCCTGCACCTACTGTGTGGCCGATGGCCGTCGCTTGGTGGcc        >  2:287520/1‑149 (MQ=255)                                                                                                                                           tCGAACCCGCCATTGATCCCCGTACGGGCGTTGTCGGGTGATAGTTGATCGACATGGTCGGCGTTTTCGCAAACTTCGTCTGAGCCTGACTGCCGCATGCAATTACGCCTGCACCTACTGTGTGGCCGATGGCCGTCGCTTGGTGGCCg       >  7:295785/1‑149 (MQ=255)                                                                                                                                             gAACCCGCCATTGATCCCCGTACGGGCGTTGTCGGGTGATAGTTGATCGACATGGTCGGCGTTTTCGCAAACTTCGTCTGAGCCTGACTGCCGCATGCAATTACGCCTGCACCTACTGTGTGGCCGATGGCCGTCGCTTGGTGGCCGc      <  2:160139/148‑1 (MQ=255)                                                                                                                                              aaCCCGCCATTGATCCCCGTACGGGCGTTGTCGGGTGATAGTTGATCGACATGGTCGGCGTTTTCGCAAACTTCGTCTGAGCCTGACTGCCGCATGCAATTACGCCTGCACCTACTGTGTGGCCGATGGCCGTCGCTTGGTGGCCGCAc    >  1:203923/1‑149 (MQ=255)                                                                                                                                                cccGCCATTGATCCCCGTACGGGCGTTGTCGGGTGATAGTTGATCGACATCGTCGGCGTTTTCGCAAACTTCGTCTGAGCCTGACTGCCGCATGCAATTACGCCTGAACCTACTGTGTGGCAGATGGACGTAGCTTGGTGGCCGCAcgc  >  3:214709/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                     TCTTCGTCGAGCGCTGGGCCAGCCATGAGGCGATAGCGCGCCATCGGCAGATGCCACATTACACGGCCATGGCCAATGCCTTGGGCGAGCTGCTAAGCGATCGTCAGGTTTATGTGCTTGAAGCGCTGGCGGAGGACATCGAACCCGCCATTGATCCCCGTACGGGCGTTGTCGGGTGATAGTTGATCGACATGGTCGGCGTTTTCGCAAACTTCGTCTGAGCCTGACTGCCGCATGCAATTACGCCTGCACCTACTGTGTGGCCGATGGCCGTCGCTTGGTGGCCGCACGC  >  NC_002947/2829222‑2829513

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.