| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4271213 = | 63 (1.050) | 4 (0.070) | 4/250 | NT | 6.9% | coding (1353/1896 nt) | mrdA‑I | transpeptidase |
| ? | NC_002947 | 4271308 = | 48 (0.850) | coding (1448/1896 nt) | mrdA‑I | transpeptidase | |||||
CGCGCCACACGACGCCAGGCCTGGTTCCCCGGCGAGACGCTGATCCTTGGCATTGGCCAGGGTTACATGCAGGTCACCCCCCTGCAGTTGGCCCAGGCCACCAGCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTGGGACCAGGTCAGCCAGGGCATGCAGATGGTCATGCACGACCCGCGCGGCATTGCCCGCGCCGCGGCCGCCGGTG > NC_002947/4271160‑4271454 | cacgatgtcgggcatggggtttgggtcgatcggcgtatcgccgcccacggtcaTGGCCAGGGTTACATGCAGGTCACCCCCCTGCAGTTGGCCCAGGCCACCAGCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCAt > 7:99618‑M1/54‑149 (MQ=255) cacGACGCCAGGCCTGGTTCCCCGGCGAGACGCTGATCCTTGGCATTGGCCAGGGTTACATGCAGGTCACCCCCCTGCAGTTGGCCCAGGCCACCAGCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTg < 7:250019/149‑1 (MQ=255) gCCAGGCCTGGTTCCCCGGCGAGACGCTGATCCTTGGCATTGGCCAGGGTTACATGCAGGTCACCCCCCTGCAGTTGGCCCAGGCCACCAGCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGggcggc < 7:87857/149‑1 (MQ=255) ccAGGCCTGGTTCCCCGGCGAGACGCTGATCCTTGGCATTGGCCAGGGTTACATGCAGGTCACCCCCCTGCAGTTGGCCCAGGCCACCAGCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGAcc < 8:9432/139‑1 (MQ=255) ccAGGCCTGGTTCCCCGGCGAGACGCTGATCCTTGGCATTGGCCAGGGTTACATGCAGGTCACCCCCCTGCAGTTGGCCCAGGCCACCAGCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGAcc > 7:9432/1‑139 (MQ=255) cAGGCCTGGTTCCCCGGCGAGACGCTGATCCTTGGCATTGGCCAGGGTTACATGCAGGTCACCCCCCTGCAGTTGGCCCAGGCCACCAGCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGa < 6:317240/149‑1 (MQ=255) ggCCTGGTTCCCCGGCGAGACGCTGATCCTTGGCATTGGCCAGGGTTACATGCAGGTCACCCCCCTGCAGTTGGCCCAGGCCACCAGCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATa < 7:60222/149‑1 (MQ=255) cTGGGTCCCCGGCGATTCGGCGCTCCTTTGCATTGGCCATGGTTTACTGCCTGTCCACCCCCTGCAGTTGGCCCAGGCCACCAGCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGc < 4:21510/149‑1 (MQ=255) tGGTTCCCCGGCGAGACGCTGATCCTTGGCATTGGCCAGGGTTACATGCAGGTCACCCCCCTGCAGTTGGCCCAGGCCCCCAGCGTCATGCCAAGCACGGCCGTGTGCCCCCCCCCGCCCGTGGCCATGACCGTGGGCGGCGAAACGcg > 8:97528/1‑148 (MQ=255) gTTCCCCGGCGAGACGCTGATCCTTGGCATTGGCCAGGGTTACATGCAGGTCACCCCCCTGCAGTTGGCCCAGGCCACCAGCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGcc < 2:81583/147‑1 (MQ=255) cccGGCGAGACGCTGATCCTTGGCATTGGCCAGGGTTACATGCAGGTCACCCCCCTGCAGTTGGCCCAGGCCACCAGCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGa < 1:234193/149‑1 (MQ=255) cTGATCCTTGGCATTGGCCAGGGTTACATGCAGGTCACCCCCCTGCAGTTGGCCCAGGCCACCAGCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCAt > 4:203073/1‑149 (MQ=255) tCCTTGGCATTGGCCAGGGTTACATGCAGGTCACCCCCCTGCAGTTGGCCCAGGCCACCAGCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGccc < 1:79815/149‑1 (MQ=255) ccTTGGCATTGGCCAGGGTTACATGCAGGTCACCCCCCTGCAGTTGGCCCAGGCCACCAGCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCTTGccc < 7:340533/148‑1 (MQ=255) ccTTGGCATTGGCCAGGGTTACATGCAGGTCACCCCCCTGCAGTTGGCCCAGGCCACCAGCCCGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCg > 3:100384/1‑149 (MQ=255) gCATTGGCCAGGGTTACATGCAGGTCACCCCCCTGCAGTTGGCCCAGGCCACCAGCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATc < 3:175428/149‑1 (MQ=255) atggccaggtgcgggcggtgccacacgcccttgcttgccagcaggctggtggcctgggccaactgcaggggggtgacctgcatgtaaccctggccaTGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGtg > 7:99618‑M2/97‑149 (MQ=255) GCCAGGGTTACATGCAGGTCACCCCCCTGCAGTTGGCCCAGGCCACCAGCCTGCTGGCACGCACGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGAGACGGGGATCGCCCCAACCCCCATGCCAGCCCTCGtgctg < 8:240739‑M1/149‑1 (MQ=255) ttACATGCAGGTCACCCCCCTGCAGTTGGCCCAGGCCACCAGCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGAc > 6:194637/1‑148 (MQ=255) aCATGCAGGTCACCCCCCTGCAGTTGGCCCAGGCCACCAGCCTGCTGGCAAGCAAGGGCGTGTGGTACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAg > 3:310785/1‑149 (MQ=255) aCATGCAGGTCACCCCCCTGCAGTTGGCCCAGGCCACCAGCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACaa < 3:203073/148‑1 (MQ=255) gTCACCCCCCTGCAGTTGGCCCAGGCCACCAGCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTg > 2:330808/1‑149 (MQ=255) gTCACCCCCCTGCAGTTGGCCCAGGCCACCAGCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTg > 6:155214/1‑149 (MQ=255) cacacgcccttgcttgccagcaggctggtggcctgggccaactgcaggggggtgacctgcatgtaaccctggccaTGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCAc > 7:112286‑M2/76‑134 (MQ=255) cacacgcccttgcttgccagcaggctggtggcctgggccaactgcaggggggtgacctgcatgtaaccctggccaTGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCAc < 8:112286‑M2/59‑1 (MQ=255) aCCCCCCTGCAGTTGGCCCAGGCCACCAGCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTGGGa < 5:333937/149‑1 (MQ=255) cccTGCAGTTGGCCCAGGCCACCAGCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTGGGACCAg > 4:111072/1‑149 (MQ=255) cttgcttgccagcaggctggtggcctgggccaactgcaggggggtgacctgcatgtaaccctggccaTGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTGGGACCAGGt < 8:99618‑M2/82‑1 (MQ=255) cTGCAGTTGGCCCAGGCCACCAGCCCGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTGGGACCAGGt < 4:100384/149‑1 (MQ=255) aGTTGGCCCAGGCCACCAGCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTGGGACCAGGTCAGc < 2:142510/149‑1 (MQ=255) gCCCAGGCCACCAGCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTGGGACCAGGTCAGCCAggg > 3:17854/1‑149 (MQ=255) gCCCAGGCCACCAGCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTGGGACCAGGTCAGCCAgg < 7:97528/148‑1 (MQ=255) gCCCAGGCCACCAGCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTGGGACCAGGTCAGCCAgg < 2:225578/148‑1 (MQ=255) gCCCAGGCCACCAGCCTGCTGGCAAGCAAGGGCGTGGGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTGGGACCAGGTCAGCCAgg < 1:313932/148‑1 (MQ=255) cccAGGCCACCAGCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTGGGACCAGGTCAGCCAGGGc < 4:17854/149‑1 (MQ=255) cAGGCCACCAGCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTGGGACCAGGTCAGCCAGGGCAt > 2:345514/1‑149 (MQ=255) cAGGCCACCAGCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTGGGACCAGGTCAGCCAGGGCAt < 8:265888/149‑1 (MQ=255) aGGCCACCAGCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTGGGACCAGGTCAGCCAGGGCATg < 1:238002/149‑1 (MQ=255) caccaGCCTGCTGGCAAGCAAGGGCGTGTGGTACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTGGGACCAGGTCAGCCAGGGCATGCAGa < 4:310785/149‑1 (MQ=255) caccaGCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTGGGACCAGGTCAGCCAGGGCATg > 1:68950/1‑145 (MQ=255) caGCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTGGGACCAg > 7:137011/1‑127 (MQ=255) caGCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTGGGACCAGGTCAGCCAGGGCATGCAGATgg > 6:317826/1‑149 (MQ=255) caGCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTGGGACCAGGTCAGCCAGGGCATGCAGATgg > 4:299819/1‑149 (MQ=255) aaGCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCTTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTGGGACCAg < 8:137011/126‑1 (MQ=255) gCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGTCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTGGGACCAGGTCAGCCAGGGCATGCAGATGGTc < 5:75063/149‑1 (MQ=255) gCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCATACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTGGGACCAGGTCAGCCAGGGCATGCAGATGGt > 1:119800/1‑148 (MQ=255) ggCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTGGGACCAGGTCAGCCAGGGCATGCAGATGGTCATGCAc > 3:329956/1‑148 (MQ=255) caagcaagGGCGTGGGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTGGGACCAGGTCAGCCAGGGCATGCAGATGGTCATGCACGAc < 7:240739/149‑1 (MQ=255) aagGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCAt > 6:231396/1‑71 (MQ=255) aagGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCAt < 5:231396/71‑1 (MQ=255) agGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAAcc < 8:274536/66‑1 (MQ=255) agGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAAcc > 7:274536/1‑66 (MQ=255) ggCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTGGGACCAGGTCAGCCAGGGCATGCAGATGGTCATGCATGACCCGCGCgg < 5:155214/149‑1 (MQ=255) tgtgGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTGGGACCAGGTCAGCCAGGGCATGCAGATGGTCATGCACGACCCGCGCGGCAtt < 1:242975/149‑1 (MQ=255) cACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTGGGACCAGGTCAGCCAGGGCATGCAGATGGTCATGCACGACCCGCGCGGCATTGCccg < 2:119800/149‑1 (MQ=255) cACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTGGGACCAGGTCAGCCAGGGCATGCAGATGGTCATGCACGACCCGCGCGGCATTGCccg > 8:315016/1‑149 (MQ=255) cgcACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTGGGACCAGGTCAGCCAGGGCATGCAGATGGTCATGCACGACCCGCGCGGCATTGCccgcgccgcg < 1:345514/149‑1 (MQ=255) ctggccaTGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTGGGACCAGGTCAGCCAGGGCATGCAGATGGTCATGCACGACCCGCGCGGCATTGCCCGCGCCGCGgccgc < 2:68950‑M2/142‑1 (MQ=255) caTGACCGTGGGCGGCGATACGCCGATCGTCCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTGGGACCAGGTCAGCCAGGGCATGCAGATGGTCATGCACGACCCGCGCGGCATTGCCCGCGCCGCGGCCGCCGGTg > 4:284371‑M2/3‑149 (MQ=255) caTGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTGGGACCAGGTCAGCCAggg < 6:307230‑M2/91‑1 (MQ=255) caTGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTGGGACCAGGTCAGCCAggg > 5:307230‑M2/3‑93 (MQ=255) caTGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTGGGACCAGGTCAGCCAGGGCATGCAGATGGTCATGCACGACCCGCGCGGCATTGCCCGCGCCGCGGCCGCCGGTg > 6:49033‑M2/3‑149 (MQ=255) | CGCGCCACACGACGCCAGGCCTGGTTCCCCGGCGAGACGCTGATCCTTGGCATTGGCCAGGGTTACATGCAGGTCACCCCCCTGCAGTTGGCCCAGGCCACCAGCCTGCTGGCAAGCAAGGGCGTGTGGCACCGCCCGCACCTGGCCATGACCGTGGGCGGCGATACGCCGATCGACCCAAACCCCATGCCCGACATCGTGCTGCACGACAAGCATGCCTGGGACCAGGTCAGCCAGGGCATGCAGATGGTCATGCACGACCCGCGCGGCATTGCCCGCGCCGCGGCCGCCGGTG > NC_002947/4271160‑4271454 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |