New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3733548 | 0 (0.000) | 16 (0.330) | 16/284 | 0.7 | 100% | coding (237/615 nt) | PP_3300 | Transcriptional regulator, tetR family |
? | NC_002947 | 3793333 = | 0 (0.000) | coding (1190/1191 nt) | PP_3355 | beta‑ketothiolase |
CCATTATGGGTACGACAAGACCACTGTTTCTGACTTAGCCAAATCGATTGGCTTTTCAAAGGCCTACATCTACAAATTCTTCGAATCCAAACAAGCGATCGGAGAGGTGATTTGCTCCAGTCGGCTTGCGCTGATCATGCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3733404‑3733548 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCAAGTTGCCGTCGCGCAATTGACGGGCCAAGGTGTGGACCAGGCGCAGACCTGTAGCGGCCAATG > NC_002947/3793333‑3793477 CCATTATGGGTACGACAAGACCACTGTTTCTGACTTAGCCAAATCGATTGGCTTTTCAAAGGCCTACATCTACAAATTCTTCGAATCCAAACAAGCGATCGGAGAGGTGATTTGCTCCAGTCGGCTTGCGGTGATCATGCAGCGCCA > 4:225015/1‑147 ACCACTGTTTCTGACTTAGCCAAATCGATTGGCTTTTCAAAGGCCTACATCTACAAATTCTTCGAATCCAAACAAGCGATCGGAGAGGTGATTTGCTCCAGTCGGCTTGCGCTGATCATGCAGCGCCAGGCAACGAAATGAGGGTTT > 2:52500/1‑147 TGTTTCTGACTTAGCCAAATCGATTGGCTTTTCAAAGGCCTACATCTACAAATTCTTCGAATCCAAACAAGCGATCGGAGAGGTGATTTGCTCCAGTCGGCTTGCGCTGATCATGCAGCGCCAGGCAACGAAATGAGGGTTTTCGAT < 7:244783/147‑1 CTTAGCCAAATCGATTGGCTTTTCAAAGGCCTACATCTACAAATTCTTCGAATCCAAACAAGCGATCGGAGAGGTGATTTCCTCCAGTCGGCTTGCGCTGATCATGCAGCGCCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCG > 4:28213/1‑146 GGCTTTTCAAAGGCCTACATCTACAAATTCTTCGAATCCAAACAAGCGATCGGAGAGGTGATTTGCTCCAGTCGGCTTGCGCTGATCATGCAGCGCCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCG > 5:235915/1‑147 TCAAAGGCCTACATCTACAAATTCTTCGAATCCAAACAAGCGATCGGAGAGGTGATTTGCTCCAGTCGGCTTGCGCTGATCATGCAGCGCCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGA < 6:126174/145‑1 GGCCTACATCTACAAATTCTTCGAATCCAAACAAGCGATCGGAGAGGTGATTTGCTCCAGTCGGCTTGCGCTGATCATGCAGCGCCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGC < 3:28213/147‑1 ACATCTACAAATTCTTCGAATCCAAACAAGCGATCGGAGAGGTGATTTGCTCCAGTCGGCTTGCGCTGATCATGCAGCGCCAGGCAACG < 7:208137/89‑1 ACATCTACAAATTCTTCGAATCCAAACAAGCGATCGGAGAGGTGATTTGCTCCAGTCGGCTTGCGCTGATCATGCAGCGCCAGGCAACG > 8:208137/1‑89 ACAAGCGATCGGAGAGGTGATTTGCTCCAGTCGGCTTGCGCTGATCATGCAGCGCCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCAAGTTGCCGTC > 2:117592/1‑147 CGGCTTGCGCTGATCATGCAGCGCCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCAAGTTGCCGTCGCGCAATTGACGGGCCAAGGTGTGGACCAGG > 5:226404/1‑147 CTTGCGCTGATCATGCAGCGCCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCAAGTTGCCGTCGCGCAATTGACGGGCCAAGGTGTGGACCAGGCGC > 8:38353/1‑147 GCTGATCATGCACCGCCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCAAGGTGCCGTCGCGCAATTGACGGGCCAAGGTGTGGACCAGGCGCAGACC < 4:123599/147‑1 TCATGCAGCGCCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCAAGTTGCCGTCGCGCAATTGACGGGCCAAGGTGTGGACCAGGCGCAGACCTGTAG > 8:78550/1‑147 GCAGCGCCAGGCAACGAAATGAGGGTTATCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCAAGTTGCCGTCGCGCAATTGACGGGCCAAGGTGTGGACCAGGCGCAGACCTGTAGCGG > 1:153306/1‑146 GCCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCAAGTTGCCGTCGCGCAATTGACGGGCCAAGGTGGGGACCAGGCGCAGACCTGTAGCGGCCAATG < 1:117592/147‑1 CCATTATGGGTACGACAAGACCACTGTTTCTGACTTAGCCAAATCGATTGGCTTTTCAAAGGCCTACATCTACAAATTCTTCGAATCCAAACAAGCGATCGGAGAGGTGATTTGCTCCAGTCGGCTTGCGCTGATCATGCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3733404‑3733548 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCAAGTTGCCGTCGCGCAATTGACGGGCCAAGGTGTGGACCAGGCGCAGACCTGTAGCGGCCAATG > NC_002947/3793333‑3793477 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |