New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3733548	0 (0.000)	16 (0.330)	16/284	0.7	100%	coding (237/615 nt)	PP_3300	Transcriptional regulator, tetR family
	?	NC_002947	3793333 =	0 (0.000)					coding (1190/1191 nt)	PP_3355	beta‑ketothiolase

CTTCCAGTACCTGGGCCGCCAGGTCGAGGTCGACGTCGGCATATGCCGGTAATTGCGCCCAGGCCTGATCGGCCCGCAGCCAGTGTTGCAGGACGAACTGCATGTCGCGCAGGGGCGCCTTCCAGGTCATCGGATACCTCCGGGTCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCAAGTTGCCGTCGCGCAATTGACGGGCCAAGGTGTGGACCAGGCGCAGACCTGTAGCGGCCAATG  >  NC_002947/3793188‑3793477                                                                                                                                                  |                                                                                                                                                 ccattatgggtacgacaagaccactgtttctgacttagccaaatcgattggcttttcaaaggcctacatctacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcggtgatcatgcagcgcCa                                                                                                                                                 >  4:225015‑M2/146‑147 (MQ=255)                    accactgtttctgacttagccaaatcgattggcttttcaaaggcctacatctacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGttt                                                                                                                              >  2:52500‑M2/127‑147 (MQ=255)                         tgtttctgacttagccaaatcgattggcttttcaaaggcctacatctacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGAt                                                                                                                         <  7:244783‑M2/26‑1 (MQ=255)                                  cttagccaaatcgattggcttttcaaaggcctacatctacaaattcttcgaatccaaacaagcgatcggagaggtgatttcctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAgcg                                                                                                                 >  4:28213‑M2/113‑146 (MQ=255)                                                  ggcttttcaaaggcctacatctacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCAccg                                                                                                >  5:235915‑M2/97‑147 (MQ=255)                                                        tcaaaggcctacatctacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGa                                                                                            <  6:126174‑M2/55‑1 (MQ=255)                                                             ggcctacatctacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGatgcatgc                                                                                     <  3:28213‑M2/62‑1 (MQ=255)                                                                  acatctacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACg                                                                                                                                          <  7:208137‑M2/9‑1 (MQ=255)                                                                  acatctacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACg                                                                                                                                          >  8:208137‑M2/81‑89 (MQ=255)                                                                                           acaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCAAGTTGCCGTc                                                       >  2:117592‑M2/56‑147 (MQ=255)                                                                                                                          cggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCAAGTTGCCGTCGCGCAATTGACGGGCCAAGGTGTGGACCAgg                        >  5:226404‑M2/25‑147 (MQ=255)                                                                                                                             cttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCAAGTTGCCGTCGCGCAATTGACGGGCCAAGGTGTGGACCAGgcgc                     >  8:38353‑M2/22‑147 (MQ=255)                                                                                                                                  gctgatcatgcaccgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCAAGGTGCCGTCGCGCAATTGACGGGCCAAGGTGTGGACCAGGCGCAGAcc                <  4:123599‑M2/131‑1 (MQ=255)                                                                                                                                       tcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCAAGTTGCCGTCGCGCAATTGACGGGCCAAGGTGTGGACCAGGCGCAGACCTGTAg           >  8:78550‑M2/12‑147 (MQ=255)                                                                                                                                           gcagcgcCAGGCAACGAAATGAGGGTTATCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCAAGTTGCCGTCGCGCAATTGACGGGCCAAGGTGTGGACCAGGCGCAGACCTGTAGCgg        >  1:153306‑M2/8‑146 (MQ=255)                                                                                                                                                gcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCAAGTTGCCGTCGCGCAATTGACGGGCCAAGGTGGGGACCAGGCGCAGACCTGTAGCGGCCAATg  <  1:117592‑M2/145‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                 CTTCCAGTACCTGGGCCGCCAGGTCGAGGTCGACGTCGGCATATGCCGGTAATTGCGCCCAGGCCTGATCGGCCCGCAGCCAGTGTTGCAGGACGAACTGCATGTCGCGCAGGGGCGCCTTCCAGGTCATCGGATACCTCCGGGTCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCAAGTTGCCGTCGCGCAATTGACGGGCCAAGGTGTGGACCAGGCGCAGACCTGTAGCGGCCAATG  >  NC_002947/3793188‑3793477

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.