New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3733548	0 (0.000)	16 (0.330)	16/284	0.7	100%	coding (237/615 nt)	PP_3300	Transcriptional regulator, tetR family
	?	NC_002947	3793333 =	0 (0.000)					coding (1190/1191 nt)	PP_3355	beta‑ketothiolase

CCATTATGGGTACGACAAGACCACTGTTTCTGACTTAGCCAAATCGATTGGCTTTTCAAAGGCCTACATCTACAAATTCTTCGAATCCAAACAAGCGATCGGAGAGGTGATTTGCTCCAGTCGGCTTGCGCTGATCATGCAGCGCATTGCGACGGCCACCAGCGACGCCCCGACTGCATCGGAAAAGCTGAGACGTCTATTCCGAGCGATCGCTGAGGGCGGAGCTGACCTTTTCTTCCACGACCGGAAGCTCTATGACATAGCGGCAGTGGCATCTCGCGACCAATGGT  >  NC_002947/3733404‑3733693                                                                                                                                                 |                                                                                                                                                  ccATTATGGGTACGACAAGACCACTGTTTCTGACTTAGCCAAATCGATTGGCTTTTCAAAGGCCTACATCTACAAATTCTTCGAATCCAAACAAGCGATCGGAGAGGTGATTTGCTCCAGTCGGCTTGCGGTGATCATGCAGCGCca                                                                                                                                                 >  4:225015‑M1/1‑145 (MQ=255)                    aCCACTGTTTCTGACTTAGCCAAATCGATTGGCTTTTCAAAGGCCTACATCTACAAATTCTTCGAATCCAAACAAGCGATCGGAGAGGTGATTTGCTCCAGTCGGCTTGCGCTGATCATGCAGCGCcaggcaacgaaatgagggttt                                                                                                                              >  2:52500‑M1/1‑126 (MQ=255)                         tGTTTCTGACTTAGCCAAATCGATTGGCTTTTCAAAGGCCTACATCTACAAATTCTTCGAATCCAAACAAGCGATCGGAGAGGTGATTTGCTCCAGTCGGCTTGCGCTGATCATGCAGCGCcaggcaacgaaatgagggttttcgat                                                                                                                         <  7:244783‑M1/147‑27 (MQ=255)                                  cTTAGCCAAATCGATTGGCTTTTCAAAGGCCTACATCTACAAATTCTTCGAATCCAAACAAGCGATCGGAGAGGTGATTTCCTCCAGTCGGCTTGCGCTGATCATGCAGCGCcaggcaacgaaatgagggttttcgatcagcagcg                                                                                                                 >  4:28213‑M1/1‑112 (MQ=255)                                                  ggCTTTTCAAAGGCCTACATCTACAAATTCTTCGAATCCAAACAAGCGATCGGAGAGGTGATTTGCTCCAGTCGGCTTGCGCTGATCATGCAGCGCcaggcaacgaaatgagggttttcgatcagcagcgccatgccttggccaccg                                                                                                >  5:235915‑M1/1‑96 (MQ=255)                                                        tCAAAGGCCTACATCTACAAATTCTTCGAATCCAAACAAGCGATCGGAGAGGTGATTTGCTCCAGTCGGCTTGCGCTGATCATGCAGCGCcaggcaacgaaatgagggttttcgatcagcagcgccatgccttggccaccgccga                                                                                            <  6:126174‑M1/145‑56 (MQ=255)                                                             ggCCTACATCTACAAATTCTTCGAATCCAAACAAGCGATCGGAGAGGTGATTTGCTCCAGTCGGCTTGCGCTGATCATGCAGCGCcaggcaacgaaatgagggttttcgatcagcagcgccatgccttggccaccgccgatgcatgc                                                                                     <  3:28213‑M1/147‑63 (MQ=255)                                                                  aCATCTACAAATTCTTCGAATCCAAACAAGCGATCGGAGAGGTGATTTGCTCCAGTCGGCTTGCGCTGATCATGCAGCGCcaggcaacg                                                                                                                                          <  7:208137‑M1/89‑10 (MQ=255)                                                                  aCATCTACAAATTCTTCGAATCCAAACAAGCGATCGGAGAGGTGATTTGCTCCAGTCGGCTTGCGCTGATCATGCAGCGCcaggcaacg                                                                                                                                          >  8:208137‑M1/1‑80 (MQ=255)                                                                                           aCAAGCGATCGGAGAGGTGATTTGCTCCAGTCGGCTTGCGCTGATCATGCAGCGCcaggcaacgaaatgagggttttcgatcagcagcgccatgccttggccaccgccgatgcatgccgctgcgatgccatagcgcaagttgccgtc                                                       >  2:117592‑M1/1‑55 (MQ=255)                                                                                                                          cGGCTTGCGCTGATCATGCAGCGCcaggcaacgaaatgagggttttcgatcagcagcgccatgccttggccaccgccgatgcatgccgctgcgatgccatagcgcaagttgccgtcgcgcaattgacgggccaaggtgtggaccagg                        >  5:226404‑M1/1‑24 (MQ=255)                                                                                                                             cTTGCGCTGATCATGCAGCGCcaggcaacgaaatgagggttttcgatcagcagcgccatgccttggccaccgccgatgcatgccgctgcgatgccatagcgcaagttgccgtcgcgcaattgacgggccaaggtgtggaccaggcgc                     >  8:38353‑M1/1‑21 (MQ=255)                                                                                                                                  gcTGATCATGCACCGCcaggcaacgaaatgagggttttcgatcagcagcgccatgccttggccaccgccgatgcatgccgctgcgatgccatagcgcaaggtgccgtcgcgcaattgacgggccaaggtgtggaccaggcgcagacc                <  4:123599‑M1/147‑132 (MQ=255)                                                                                                                                       tCATGCAGCGCcaggcaacgaaatgagggttttcgatcagcagcgccatgccttggccaccgccgatgcatgccgctgcgatgccatagcgcaagttgccgtcgcgcaattgacgggccaaggtgtggaccaggcgcagacctgtag           >  8:78550‑M1/1‑11 (MQ=255)                                                                                                                                           gCAGCGCcaggcaacgaaatgagggttatcgatcagcagcgccatgccttggccaccgccgatgcatgccgctgcgatgccatagcgcaagttgccgtcgcgcaattgacgggccaaggtgtggaccaggcgcagacctgtagcgg        >  1:153306‑M1/1‑7 (MQ=255)                                                                                                                                                gccaggcaacgaaatgagggttttcgatcagcagcgccatgccttggccaccgccgatgcatgccgctgcgatgccatagcgcaagttgccgtcgcgcaattgacgggccaaggtggggaccaggcgcagacctgtagcggccaatg  <  1:117592‑M1/147‑146 (MQ=255)                                                                                                                                                 |                                                                                                                                                  CCATTATGGGTACGACAAGACCACTGTTTCTGACTTAGCCAAATCGATTGGCTTTTCAAAGGCCTACATCTACAAATTCTTCGAATCCAAACAAGCGATCGGAGAGGTGATTTGCTCCAGTCGGCTTGCGCTGATCATGCAGCGCATTGCGACGGCCACCAGCGACGCCCCGACTGCATCGGAAAAGCTGAGACGTCTATTCCGAGCGATCGCTGAGGGCGGAGCTGACCTTTTCTTCCACGACCGGAAGCTCTATGACATAGCGGCAGTGGCATCTCGCGACCAATGGT  >  NC_002947/3733404‑3733693

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.