| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 167936 = | 69 (1.150) | 5 (0.090) | 5/254 | NT | 6.4% | coding (308/918 nt) | gcdR | gcdH transcriptional regulator |
| ? | NC_002947 | 167990 = | 80 (1.380) | coding (254/918 nt) | gcdR | gcdH transcriptional regulator | |||||
CGTCGCTCGCGCCGCGGCGTAAGGCTGACCGAAGCCGGCCTGTCCTACAGTCGCCAGGTGGCGGCCCAACTGGACGCTGTGGAGCGCGATACCTTGTCGGTAATGCGCCAGCAAGGCGCCAATGTGATCGAGCTGGCGGTAGTTCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/168084‑167936‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgacAAGGTATCGCGCTCCACAGCGTCCAGTTGGGCCGCCACCTGGCGACTGTAGGACAGGCCGGCTTCGGTCAGCCTTACGCCGCGGCGCGAGCGACGGAACAGTTCCACATTAAGGAACGCTTCCAGGCCACCGATCTGCCGACAGACG > NC_002947/167990‑168136 CGTCGCTCGCGCCGCGGCGTAAGGCTGACCGAAGCCGGCCTGTCCTACAGTCGCCAGGTGGCGGCCCAACTGGACGCTGTGGAGCGCGATACCTTGTCGGTAATGCGCCAGCAAGGCGCCAATGTGATCGAGCTGGCGGTAGTTCCGAC < 6:353012/149‑1CGTCGCTCGCGCCGCGGCGTAAGGCTGACCGAAGCCGGCCTGTCCTACAGTCGCCAGGTGGCGGCCCAACTGGACGCTGTGGAGCGCGATACCTTGTCGGTAATGCGCCAGCAAGGCGCCAATGTGATCGAGCTGGCGGTAGTTCCGA < 3:248667/148‑1 CTTGTCGGTAATGCGCCAGCAAGGCGCCAATGTGATCGAGCTGGCGGTAGTTCCGACAAGGTATCGCGCTCCACAGCGTCCAGTTGGGCCGCCACCTGGCGACTGTAGGACAGGCCGGCTTCGGTCAGCCTTACGCCGCGGCGCGAGC > 3:70398/1‑148 TTGTCGGTAATGCGCCAGCAAGGCGCCAATGTGATCGAGCTGGCGGTAGTTCCGACAAGGTATCGCGCTCCACAGCGTCCAGTTGGGCCGCCAC < 5:345935/94‑1 TTGTCGGTAATGCGCCAGCAAGGCGCCAATGTGATCGAGCTGGCGGTAGTTCCGACAAGGTATCGCGCTCCACAGCGTCCAGTTGGGCCGCCAC > 6:345935/1‑94 TGCGCCAGCAAGGCGCCAATGTGATCGAGCTGGC‑GCATTACCGACAAGGTATCGCGCTCCACAGCGTCCAGTTGGGCCGCCACCTGGCGACTGTAGGACAGGCCGGCTTCCGTCAGCCTTACGCCGCGGCGCGAGCGACGGAACAGTTC > 2:120447/1‑149 CCAGCAAGGCGCCAATGTGATCGAGCTGGC‑GCATTACCGACAAGGTATCGCGCTCCACAGCGTCCAGTTGGGCCGCCACCTGGCGACTGTAGGACAGGCCGGCTTCGGTCAGCCTTACGCCGCGTCGCGAGCGACGGAACAGTTCCACA < 1:120447/149‑1 CCGACAAGGTATCGCGCTCCACAGCGTCCAGTTGGGCCGCCACCTGGCGACTGTAGGACAGGCCGGCTTCGGTCAGCCTTACGCCGCGGCGCGAGCGACGGAACAGTTCCACATTAAGGAACGCTTCTAGGCCACCGATCTGCCGA > 5:110437/1‑146 CCGACAAGGTATCGCGCTCCACAGCGTCCAGTTGGGCCGCCACCTGGCGACTGTAGGACAGGCCGGCTTCGGTCAGCCTTACGCCGCGGCGCGAGCGACGGAACAGTTCCACATTAAGGAACGCTTCCAGGCCACCGATCTGCCGACAG < 2:287812/149‑1 CCGACAAGGTATCGCGCTCCACAGCGTCCAGTTGGGCCGCCACCTGGCGACTGTAGGACAGGCCGGCTTCGGTCAGCCTTACGCCGCGGCGCGAGCGACGGAACAGTTCCACATTAAGGAACGCTTCCAGGCCACCGATCTGCCGACAG < 4:349053/149‑1 CGACAAGGTATCGCGCTCCACAGCGTCCAGTTGGGCCGCCACCTGGCGACTGTAGGACAGGCCGGCTTCGGTCAGCCTTACGCCGCGGCGCGAGCGACGGAACAGTTCCACATTAAGGAACGCTTCCAGGCCACCGATCTGCCGACAGA > 1:237782/1‑149 CGACAAGGTATCGCGCTCCACAGCGTCCAGTTGGGCCGCCACCTGGCGACTGTAGGACAGGCCGGCTTCGGTCAGCCTTACGCCGCGGCGCGAGCGACGGAACAGTTCCACATTAAGGAACGCTTCCAGGCCACCGATCTGCCGACAGA > 4:101349/1‑149 CGACAAGGTATCGCGCTCCACAGCGTCCAGTTGGGCCGCCACCTGGCGACTGTAGGACAGGCCGGCTTCGGTCAGCCTTACGCCGCGGCGCGAGCGACGGAACAGTTCCACATTAAGGAACGCTTCCAGGCCACCGATCTGCCGACAGA > 5:199656/1‑149 ACAAGGTATCGCGCTCCACAGCGTCCAGTTGGGCCGCCACCTGGCGACTGTAGGACAGGCCGGCTTCGGTCAGCCTTACGCCGCGGCGCGAGCGACGGAACAGTTCCACATTAAGGAACGCTTCCAGGCCACCGATCTGCCGACAGACG > 7:87691/1‑149 CGTCGCTCGCGCCGCGGCGTAAGGCTGACCGAAGCCGGCCTGTCCTACAGTCGCCAGGTGGCGGCCCAACTGGACGCTGTGGAGCGCGATACCTTGTCGGTAATGCGCCAGCAAGGCGCCAATGTGATCGAGCTGGCGGTAGTTCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/168084‑167936‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgacAAGGTATCGCGCTCCACAGCGTCCAGTTGGGCCGCCACCTGGCGACTGTAGGACAGGCCGGCTTCGGTCAGCCTTACGCCGCGGCGCGAGCGACGGAACAGTTCCACATTAAGGAACGCTTCCAGGCCACCGATCTGCCGACAGACG > NC_002947/167990‑168136 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |