New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	655539 =	62 (1.030)	4 (0.070)	3/248	NT	6.6%	coding (804/1356 nt)	PP_0563	two‑component system response regulator
	?	NC_002947	655583 =	55 (0.970)					coding (760/1356 nt)	PP_0563	two‑component system response regulator

GCCTGCACCGGCCCGGAGCTGGCCAAGGTAATCCGCCACAGTGACCGTTATGTGAGTGTGCCGATCATCTACCTGTCTGCCGAGGACGACCTGGACAAGCAACTGGATGCCATGAGCGAAGGCGGTGATGACTTTTTGACCAAGCCG‑TTTCGCTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/655694‑655539 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgctcaTGGCATCCAGTTGCTTGTCCAGGTCGTCCTCGGCAGACAGGTAGATGATCGGCACACTCACATAACGGTCACTGTGGCGGATTACCTTGGCCAGCTCCGGGCCGGTGCAGGCCGGCATGTACAGGTCGAGGATGATCAGGTCGGGC  >  NC_002947/655583‑655728                                                                                                                                                                                                                                                                                                                 GCCTGCACCGGCCCGGAGCTGGCCAAGGTAATCCGCCACAGTGACCGTTATGTGAGTGTGCCGATCATCTACCTGTCTGCCGAGGACGACCTGGACAAGCAACTGGATGCCATGAGCGAAGGCGGTGATGACTTTTTGACCAAGCCG‑TT                                                                                                                                                           <  2:42431/149‑1  ccagctCCGGGCCGGTGCAGGCCAAGGTAATCCGCCACAGTGACCGTTATGTGAGTGTGCCGATCATCTACCTGTCTGCCGAGGACGACCTGGACAAGCAACTGGATGCCATGAGCGAAGGCGGTGATGACTTTTTGACGAAGCCG‑TTT                                                                                                                                                          >  2:85640/7‑149   CTGCACCGGCCCGGAGCTGGCCAAGGTAATCCGCCACAGTGACCGTTATGTGAGTGTGCCGATCATCTACCTGTCTGCCGAGGACGACCTGGACAAGCAACTGGATGCCATGAGCGAAGGCGGTGATGACTCTTTGACCAAGCCG‑TTTC                                                                                                                                                         >  5:322441/1‑149                                                  ATGTGAGTGTGCCGATCATCTACCTGTCTGCCGAGGACGACCTGGACAAGCAACTGGATGCCATGAGCGAAGGCGGTGATGACTTTTTGACCAAGCCG‑TTTCG                                                                                                                                                        <  3:57428/103‑1                                                  ATGTGAGTGTGCCGATCATCTACCTGTCTGCCGAGGACGACCTGGACAAGCAACTGGATGCCATGAGCGAAGGCGGTGATGACTTTTTGACCAAGCCG‑TTTCG                                                                                                                                                        >  4:57428/1‑103                                                                                                               CATGAGCGAAGGCGGTGATGACTTTTTGACCAAGCCGTTTTCGCTCATGGCATCCAGTTGCTTGTCCAGGTCGTCCTCGGCAGACAGGTAGATGATCGGCACACTCACATAACGGTCACTGTGGCGGATTACCTTGGCCAGCTCCGGGC                                              >  1:67968/1‑149                                                                                                               CATGAGCGAAGGCGGTGATGACTTTTTGACCAAGCCG‑TTTCGCTCATGGCATCCAGTTGCTTGTCCAGGTCGTCCTCGGCAGACAGGTAGATGATCGGCACACTCACATAACGGTCACTGTGGCGGATTACCTTGGCCAGCTCCGGGCC                                             >  5:134617/1‑149                                                                                                                ATGAGCGAAGGCGGTGATGACTTTTTGACCAAGCCG‑TTTCGCTCATGGCATCCAGTTGCTTGTCCAGGTCGTCCTCGGCAGACAGGTAGATGATCGGCACACTCACATAACGGTCACTGTGGCGGATTACCTTGGCCAGCTCCGGGCCG                                            >  4:362966/1‑149                                                                                                                      GAAGGCGGTGATGACTTTTTGACCAAGCCG‑TTTCGCTCATGGCATCCAGTTGCTTGTCCAGGTCGTCCTCGGCAGACAGGTAGATGATCGGCACACTCACATAACGGTCACTGTGGCGGATTACCTTGGCCAGCTCCGGGCCGGTGCAG                                      <  6:134617/149‑1                                                                                                                                                          CTCATGGCATCCAGTTGCTTGTCCAGGTCGTCCTCGGCAGACAGGTAGATGATCGGCACACTCACATAACGGTCACTGTGGCGGATTACCTTGGCCAGCTCCGGGCCGGTGCAGGCCCGCATGTACAGGTCGAGGATGATCAGGTCGGG   >  5:284618/1‑149                                                                                                                                                           TCATGGCATCCAGTTGCTTGTCCAGGTCGTCCTCGGCAGACAGGTAGATGATCGGCACACTCACATAACGGTCACTGTGGCGGATTACCTTGGCCAGCTCCGGGCCGGTGCAGGCCGGCATGTACAGGTCGAGGATGATCAGGTCGGGC  >  4:53630/1‑149                                                                                                                                                           TCATGGCATCCAGTTGCTTGTCCAGGTCGTCCTCGGCAGACAGGTAGATGATCGGCACACTCACATAACGGTCACTGTGGCGGATTACCTTGGCCAGCTCCGGGCCGGTGCAGGCCGGCATGTACAGGTCGAGGATGATCAGGTCGGGC  >  7:222001/1‑149                                                                                                                                                                                                                                                                                                                 GCCTGCACCGGCCCGGAGCTGGCCAAGGTAATCCGCCACAGTGACCGTTATGTGAGTGTGCCGATCATCTACCTGTCTGCCGAGGACGACCTGGACAAGCAACTGGATGCCATGAGCGAAGGCGGTGATGACTTTTTGACCAAGCCG‑TTTCGCTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/655694‑655539 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgctcaTGGCATCCAGTTGCTTGTCCAGGTCGTCCTCGGCAGACAGGTAGATGATCGGCACACTCACATAACGGTCACTGTGGCGGATTACCTTGGCCAGCTCCGGGCCGGTGCAGGCCGGCATGTACAGGTCGAGGATGATCAGGTCGGGC  >  NC_002947/655583‑655728

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.