New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 906270 | 52 (0.860) | 3 (0.050) | 3/252 | NT | 5.8% | coding (281/573 nt) | ampD | N‑acetyl‑anhydromuramyl‑L‑alanine‑amidase |
? | NC_002947 | = 906325 | 48 (0.840) | coding (336/573 nt) | ampD | N‑acetyl‑anhydromuramyl‑L‑alanine‑amidase |
CCCGGCCTGTTTCGGCACGGGCAAGGTGCAGCAATTCTTCCAGAACCGCCTGGCCCCTGATGAACACCCGTATTTTGCCAGCATCAACCACCTGACCGTGTCGGCGCACCTGTTCGTCGAGCGTGACGGCGCGGTGACTCAGTTCGTGTCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/906118‑906270 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgttACAGCCTTCGCGCCCGTCAAAGCTCGACACACCCGCATGCCAGGCACGGTCATGCAACGACACGAACTGAGTCACCGCGCCGTCACGCTCGACGAACAGGTGCGCCGACACGGTCAGGTGGTTGATGCTGGCAAAATACGGGTGTT < NC_002947/906325‑906180 CCCGGCCTGTTTCGGCACGGGCAAGGTGCAGCAATTCTTCCAGACCCGCCTGGCCCCTGATGAACACCCGTATTTTGCCAGCATCAACCACCTGACCGTGTCGGCGCACCTGTTCGTCGAGCGTGACGGCGCGGTGACTCAGTTCGTGT > 7:257213/1‑149 CCCGGCCTGTTTCGGCACGGGCAAGGTGCAGCAATTCTTCCAGAACCGCCTGGCCCCTGATGAACACCCGTATTTTGCCAGCATCAACCACCTGACCGTGTCGGCGCACCTGTTCGTCGAGCGTGACGGCGCGGTGACTCAGTTCGTGT > 4:274577/1‑149 GCCTGTTTCGGCACGGGCAAGGTGCAGCAATTCTTCCAGAACCGCCTGGCCCCTGATGAACACCCGTATTTTGCCAGCATCAACCCCCTGACCGTGTCGGCGCACCTGTTCGTCGAGCGTGACGGCGCGGTGACTCAGTTCGTGTCGTT > 6:140786/1‑149 GCCTGTTTCGGCACGGGCAAGGTGCAGCAATTCTTCCAGAACCGCCTGGCCCCTGATGAACACCCGTATTTTGCCAGCATCAACCACCTGACCGTGTCGGCGCACCTGTTCGTCGAGCGTGACGGCGCGGTGACTCAGTTCGTGTCGTT < 1:57989/149‑1 GCCTGTTTCGGCACGGGCAAGGTGCAGCAATTCTTCCAGAACCGCCTGGCCCCTGATGAACACCCGTATTTTGCCAGCATCAACCACCTGACCGTGTCGGCGCACCTGTTCGTCGAGCGTGACGGCGCGGTGACTCAGTTCGTGTCGTT < 5:269562/149‑1 GCCTGTTTCGGCACGGGCAAGGTGCAGCAATTCTTCCAGAACCGCCTGGCCCCTGATGAACACCCGTATTTTGCCAGCATCAACCACCTGACCGTGTCGGCGCACCTGTTCGTCGAGCGTGACGGCGCGGTGACTCAGTTCGTGTCGTT < 8:89024/149‑1 AGAACCGCCTGGCCCCTGATGAACACCCGTATTTTGCCAGCATCAACCACCTGACCGTGTCGGCGCACCTGTTCGTCGAGCGTGACGGCGCGGTGACTCAGTTCGTGTCGTTACAGCCTTCGCGCCCGTCAAAGCTCGACACACCCGC > 4:290715/1‑148 CCCGTATTTTGCCAGCATCAACCACCTGACCGTGTCGGCGCACCTGTTCGTCGAGCGTGACGGCGCGGTGACTCAGTTCGTGTCGTTACAGCCTTCGCGCCCGTCAAAGCTCGACACACCCGCATGCCAGGCACGGTCATGCAACGACA < 3:290715/149‑1 CCGTATTTTGCCAGCATCAACCACCTGACCGTGTCGGCGCACCTGTTCGGCGAGCGTGACGGCGCGGTGACTCAGTTCGTGTCGTTACAGCCTTCGCGCCCGTCAAAGCTCGACACACCCGCATGCCAGGCACGGTCATGCAACGACAC < 7:238816/149‑1 GTCGTTACAGCCTTCGCGCCCGTCAAAGCTCGACACACCCGCATGCCAGGCACGGTCATGCAACGACACGAACTGAGTCACCGCGCCGTCACGCTCGACGAACAGGTGCGCCGACACGGTCAGGTGGTTGATGCTGGCAAAATACGGGT < 1:129471/149‑1 GTTACAGCCTTCGCGCCCGTCAAAGCTCGACACACCCGCATGCCAGGCACGGTCATGCAACGACACGAACTGAGTCACCGCGCCGTCACGCTCGACGAACAGGTGCGCCGACACGGTCAGGTGGTTGATGCTGGCAAAATACGGGTGTT > 7:183528/1‑149 CCCGGCCTGTTTCGGCACGGGCAAGGTGCAGCAATTCTTCCAGAACCGCCTGGCCCCTGATGAACACCCGTATTTTGCCAGCATCAACCACCTGACCGTGTCGGCGCACCTGTTCGTCGAGCGTGACGGCGCGGTGACTCAGTTCGTGTCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/906118‑906270 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgttACAGCCTTCGCGCCCGTCAAAGCTCGACACACCCGCATGCCAGGCACGGTCATGCAACGACACGAACTGAGTCACCGCGCCGTCACGCTCGACGAACAGGTGCGCCGACACGGTCAGGTGGTTGATGCTGGCAAAATACGGGTGTT < NC_002947/906325‑906180 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |