New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1042220	83 (1.380)	6 (0.110)	4/250	NT	7.1%	coding (30/1311 nt)	colS	integral membrane sensor signal transduction histidine kinase
	?	NC_002947	= 1042247	79 (1.390)					coding (57/1311 nt)	colS	integral membrane sensor signal transduction histidine kinase

CTGCCCTGATAGCGACAGCCTGCGCAGCCATGTGCATCAGCTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1042066‑1042220 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcgcGCTCATCAGGGCAAAGGCGATGATGATGCGCTGGGCAAGGCTTTGCTTAAACTCCATCGCGGCCCTCGGCGAGGCGATAGCCGACGCCATGGACGGTATGCAGCAACGGTTTCTCAAACGGTTTGTCGATCACCTGGCGCAGC  <  NC_002947/1042247‑1042105                                                                                                                                                                                                                                                                                                            CTGCCCTGATAGCGACAGCCTGCGCAGCCATGTGCATCAGCTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCC                                                                                                                                                       >  5:270503/1‑149     CCTGATAGCGACAGCCTGCGCAGCCATGTGCATCAGCTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGC                                                                                                                                                   >  4:347876/1‑149      CTGATAGCGACAGCCTGCGCAGCCATGTGCATCAGCTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCGGCGATGGGGTTTAAGCAAAGCCGTGCCCAGCG                                                                                                                                                  >  2:341336/1‑149             CGACAGCCTGCGCAGCCATGTGCATCAGCTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCGCTCAT                                                                                                                                           >  8:68321/1‑149                                         CTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCGCTCATCAGGGCAAAGGCGATGATGATGTGCTGG                                                                                                               <  7:68321/149‑1                                         CTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCGCTCATCAGGGCAAAGGCGATGATGATGCGCTGG                                                                                                               <  5:310343/149‑1                                         CTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCGCTCATCAGGGCAAAGGCGATGATGATGCGCTGG                                                                                                               <  6:150922/149‑1                                                                           CGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCGCTCATCAGGGCAAAGGCGATGATGATGCGCTGGGCAAG                                                                                                          <  1:121905/120‑1                                                                           CGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCGCTCATCAGGGCAAAGGCGATGATGATGCGCTGGGCAAG                                                                                                          >  2:121905/1‑120                                                                                                                                                     CCAGCGCGCTCATCAGGGCAAAGGCGATGATGATGCGCTGGGCAAGGCTTTGCTTAAACTCCATCGCGGCCCTCGGCGAGGCGATAGCCGACGCCATGGACGGTATGCAGCAACGGTTTCTCAAACGGTTTGTCGATCACCTGGCGCAG   <  4:90563/149‑1                                                                                                                                                     CCAGCGCGCTCATCAGGGCAAAGGCGATGATGATGCGCTGGGCAAGGCTTTGCTTAAACTCCATCGCGGCCCTCGGCGAGGCGATAGCCGACGCCATGGACGGTATGCAGCAACGGTTTCTCAAACGGTTTGTCGATCACCTGGCGCAG   <  5:189376/149‑1                                                                                                                                                      CAGCGCGCTCATCAGGGCAAAGGCGATGATGATGCGCTGGGCAAGGCTTTGCTTAAACTCCATCGCGGCCCTCGGCGAGGCGATAGCCGACGCCATGGACGGTATGCAGCAACGGTTTCTCAAACGGTTTGTCGATCACCTGGCGCAGC  <  5:137689/149‑1                                                                                                                                                       AGCGCGCTCATCAGGGCAAAGGCGATGATGATGCGCTGGGCAAGGCTTTGCTTAAACTCCATCGCGGCCCTCGGCGAGGCGATAGCCGACGCCATGGGCGGTATGCAGCAACGGTTTCTCAAACGGTTTGTCGATC              >  3:243846/1‑136                                                                                                                                                       AGCGCGCTCATCAGGGCAAAGGCGATGATGATGCGCTGGGCAAGGCTTTGCTTAAACTCCATCGCGGCCCTCGGCGAGGCGATAGCCGACGCCATGGGCGGTATGCAGCAACGGTTTCTCAAACGGTTTGTCGATC              <  4:243846/136‑1                                                                                                                                                                                                                                                                                                            CTGCCCTGATAGCGACAGCCTGCGCAGCCATGTGCATCAGCTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1042066‑1042220 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcgcGCTCATCAGGGCAAAGGCGATGATGATGCGCTGGGCAAGGCTTTGCTTAAACTCCATCGCGGCCCTCGGCGAGGCGATAGCCGACGCCATGGACGGTATGCAGCAACGGTTTCTCAAACGGTTTGTCGATCACCTGGCGCAGC  <  NC_002947/1042247‑1042105

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.