| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1304757 | 64 (1.060) | 4 (0.070) | 4/248 | NT | 6.1% | coding (640/1257 nt) | livM | branched‑chain amino acid ABC transporter permease |
| ? | NC_002947 | = 1304781 | 64 (1.130) | coding (616/1257 nt) | livM | branched‑chain amino acid ABC transporter permease | |||||
AGGAAGATGACCTTGTTGATCGAGTTGTATTGCAGCCCGAAGAACTCGTGGAAGGTCTGCATGCCCTCGGCCGCACGGCGTTCGAAGGTCAGGCCGAAGAACTCCGGCTTGGGGATGTTGCTGATGCCGTTGGGGCCGCCGGTCCAGTCGGTGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1304603‑1304757‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggtgagATCATCCGCCTGTTCCTGCGTAACCTCACCGACTGGACCGGCGGCCCCAACGGCATCAGCAACATCCCCAAGCCGGAGTTCTTCGGCCTGACCTTCGAACGCCGTGCGGCCGAGGGCATGCAGACCTTCCACGAGTTCTTCGGG < NC_002947/1304781‑1304638 AGGAAGATGACCTTGTTGATCGAGTTTTATTGCAGCCCGAAGAACTCGTGGAAGGTCTGCATGCCCTCGGCCGCACGGCGTTCGAAGGTCAGGCCGAAGAACTCCGGCTTGGGGATGTTGCTGATGCCGTTGGGGCCGCCGGTCCAGTC > 1:10477/1‑149AGGAAGATGACCTTGTTGATCGAGTTGTATTGCAGCCCGAAGAACTCGTGGAAGGTCTGCATGCCCTCGGCCGCACGGCGTTCGAAGGTCAGGCCGAAGAACTCCGGCTTGGGGATGTTGCTGATGCCGTTGGGGCCGCCGGTCCAGTC > 7:79799/1‑149 AGATGACCTTGTTGATCGAGTTGTATTGCAGCCCGAAGAACTCGTGGAAGGTCTGCATGCCCTCGGCCGCACGGCGTTCGAAGGTCAGGCCGAAGAACTCCGGCTTGGGGATGTTGCTGATGCCGTTGGGGCCGCCGGTCCAGTCGGT > 8:316475/1‑148 GATGACCTTGTTGATCGAGTTGTATTGCAGCCCGAAGAACTCGTGGAAGGTCTGCATGCCCTCGGCCGCACGGCGTTCGAAGGTCAGGCCGAAGAACTCCGGCTTGGGGATGTTGCTGATGCCGTTGGGGCCGCCGGTCCAGTCGGTGA < 7:218475/149‑1 CCGAAGAACTCGTGGAAGGTCTGCATGCCCTCGGCCGCACGGCGTTCGAAGGTCAGGCCGAAGAACTCCGGCTTGGGGATGTTGCTGATGCCGTTGGGGCCGCCGGTCCAGTCGGTGAGATCATCCGCCTGTTCCTGCGTAACCTCACC > 8:279991/1‑149 AGAACTCGTGGAAGGTCTGCATGCCCTCGGCCGCACGGCGTTCGAAGGTCAGGCCGAAGAACTCCGGCTTGGGGATGTTGCTGATGCCGTTGGGGCCGCCGGTCCAGTCGGTGAGATCATCCGCCTGTTCCTGCGTAACCTCACCGACT < 7:279991/149‑1 ACGGCGTTCGAAGGTCAGGCCGAAGAACTCCGGCTTGGGGATGTTGCTGATGCCGTTGGGGCCGCCGGTCCAGTCGGTGAGATCATCCGCCTGTTCCTGCGTAACCTCACCGA > 7:89595/1‑113 ACGGCGTTCGAAGGTCAGGCCGAAGAACTCCGGCTTGGGGATGTTGCTGATGCCGTTGGGGCCGCCGGTCCAGTCGGTGAGATCATCCGCCTGTTCCTGCGTAACCTCACCGA < 8:89595/113‑1 GGTGAGATCATCCGCCTGTTCCTGCGTAACCTCACCGACTGGACCGGCGGCCCCAACGGCATCAGCAACATCCCCAAGCCGGAGTTCTTCGGCCTGACCTTCGAACGCCGTGCGGCCGAGGGCATGCAGACCTTCCACGAGTTCTTCG < 7:29157/148‑1 GTGAGATCATCCGCCTGTTCCTGCGTAACCTCACCGACTGGACCGGCGGCCCCAACGGCATCAGCAACATCCCACAGCCGGACTTCTTCGGCCTGACCTTCGAACGCCGTGCGGCAGAGGACATCCAGACCTTCCCAGAGTTCTTCGtc > 3:210056/1‑147 GATCATCCGCCTGTTCCTGCGTAACCTCACCGACTAGCCCGGCGGCCCCAACGGCATCAGCAACATCCCCAAGCCGGAGTTCTTCGGCCTGACCTT < 8:242193/96‑1 AGGAAGATGACCTTGTTGATCGAGTTGTATTGCAGCCCGAAGAACTCGTGGAAGGTCTGCATGCCCTCGGCCGCACGGCGTTCGAAGGTCAGGCCGAAGAACTCCGGCTTGGGGATGTTGCTGATGCCGTTGGGGCCGCCGGTCCAGTCGGTGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1304603‑1304757‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggtgagATCATCCGCCTGTTCCTGCGTAACCTCACCGACTGGACCGGCGGCCCCAACGGCATCAGCAACATCCCCAAGCCGGAGTTCTTCGGCCTGACCTTCGAACGCCGTGCGGCCGAGGGCATGCAGACCTTCCACGAGTTCTTCGGG < NC_002947/1304781‑1304638 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |