New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1404578	73 (1.210)	4 (0.070)	4/254	NT	5.5%	coding (1104/2067 nt)	PP_1228	methyl‑accepting chemotaxis transducer
	?	NC_002947	= 1404605	67 (1.160)					coding (1077/2067 nt)	PP_1228	methyl‑accepting chemotaxis transducer

CTGCAGCGAGCCTTTGACCTGGGCAATGACCGGTTGCAACTTGTCGAGGAAACGGTTGAACCAGCCGGTGAGCTGGCCCAGTTCATCCTGGTGGGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1404428‑1404578 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgt‑TA‑CCCGGCCAATCCTGGCCGTGGCTGCACGCCTGGAAGACATTGCCAGTGGCGAAGGCGACCTTACCCGTCGCCTGGACTACGCCCACCAGGATGAACTGGGCCAGCTCACCGGCTGGTTCAACCGTTTCCTCGACAAGTTGCAAC  <  NC_002947/1404605‑1404460                                                                                                                                                                                                                                                                                                             CTGCAGCGAGCCTTTGACCTGGGCAATGACCGGTTGCAACTTGTCGAGGAAACGGTTGAACCAGCCGGTGAGCTGGCCCAGTTCATCCTGGTGGGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAG                                                                                                                                                          <  2:69483/147‑1                              CCGGTTGCAACTTGTCGAGGAAACGGTTGAACCAGCCGGTGAGCTGGCCCAGTTCATCCTGGTGGGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCCGGCCAATCCTGGCCGTGGCT                                                                                                                           <  5:139468/149‑1                                      AACTTGTCGAGGAAACGGTTGAACCAGCCGGTGAGCTGGCCCAGTTCATCCTGGTGGGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGT‑TA‑CCCGGCCAATCCTGGCCGTGGCTGCACGCCTGG                                                                                                                 <  6:364270/149‑1                                                   AACGGTTGAACCAGCCGGTGAGCTGGCCCAGTTCATCCTGGTGGGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGT‑TA‑CCCGGCCAATCCTGGCCGTGGCTGCACGCCTG                                                                                                                  <  3:213945/135‑1                                                   AACGGTTGAACCAGCCGGTGAGCTGGCCCAGTTCATCCTGGTGGGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGT‑TA‑CCCGGCCAATCCTGGCCGTGGCTGCACGCCTG                                                                                                                  >  4:213945/1‑135                                                                                                                                                     ctT‑TA‑CCCGGACAATCCTGGCCGTTGCTGCACGCCTGGAAGACATTGCCAGTGGCGAAGGCGACCTTACCCGTCGCCTGGACTACGCCCACCAGGATGAACTGGGCCAGCTCACCGGCTGGTTCAACCGTTTCCTCGACAAGTTGCAAC  <  6:185821/147‑1                                                                                                                                                                                                                                                                                                             CTGCAGCGAGCCTTTGACCTGGGCAATGACCGGTTGCAACTTGTCGAGGAAACGGTTGAACCAGCCGGTGAGCTGGCCCAGTTCATCCTGGTGGGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1404428‑1404578 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgt‑TA‑CCCGGCCAATCCTGGCCGTGGCTGCACGCCTGGAAGACATTGCCAGTGGCGAAGGCGACCTTACCCGTCGCCTGGACTACGCCCACCAGGATGAACTGGGCCAGCTCACCGGCTGGTTCAACCGTTTCCTCGACAAGTTGCAAC  <  NC_002947/1404605‑1404460

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.