New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1404578	73 (1.210)	4 (0.070)	4/254	NT	5.5%	coding (1104/2067 nt)	PP_1228	methyl‑accepting chemotaxis transducer
	?	NC_002947	= 1404605	67 (1.160)					coding (1077/2067 nt)	PP_1228	methyl‑accepting chemotaxis transducer

GTTGCAACTTGTCGAGGAAACGGTTGAACCAGCCGGTGAGCTGGCCCAGTTCATCCTGGTGGGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCCTGCAGCACGCTTTCCGG  >  NC_002947/1404460‑1404751                                                                                                                                                   |                                                                                                                                                    gTTGCAACTTGTCGAGGAAACGGTTGAACCAGCCGGTGAGCTGGCCCAGTTCATCCTGGTGGGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCAACGGCCAGGATTGTCCGGG‑TAaag                                                                                                                                                  <  6:185821‑M2/149‑4 (MQ=255)    gCAACTTGTCGAGGAAACGGTTGAACCAGCCGGTGAGCTGGCCCAGTTCATCCTGGTGGGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAAcgccg                                                                                                                                               >  7:80408/1‑149 (MQ=255)       aCTTGTCGAGGAAACGGTTGAACCAGCCGGTGAGCTGGCCCAGTTCATCCTGGTGGGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCcgcgc                                                                                                                                            >  5:275976/1‑149 (MQ=255)           gTCGAGGAAACGGTTGAACCAGCCGGTGAGCTGGCCCAGTTCATCCTGGTGGGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCcgcgcgcg                                                                                                                                         <  1:29246/148‑1 (MQ=255)              gAGGAAACGGTTGAACCAGCCGGTGAGCTGGCCCAGTTCATCCTGGTGGGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGt                                                                                                                                       >  4:132106/1‑147 (MQ=255)              gAGGAAACGGTTGAACCAGCCGGTGAGCTGGCCCAGTTCATCCTGGTGGGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGt                                                                                                                                       >  7:91087/1‑147 (MQ=255)                 gAAACGGTTGAACCAGCCGGTGAGCTGGCCCAGTTCATCCTGGTGGGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGcc                                                                                                                                  <  8:60714/149‑1 (MQ=255)                 gAAACGGTTGAACCAGCCGGTGAGCTGGCCCAGTTCATCCTGGTGGGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGc                                                                                                                                   >  5:288085/1‑148 (MQ=255)                       gTTGAACCAGCCGGTGAGCTGGCCCAGTTCATCCTGGTGGGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACca                                                                                                                            >  3:125604/1‑149 (MQ=255)                        ttGAACCAGCCGGTGAGCTGGCCCAGTTCATCCTGGTGGGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACcag                                                                                                                           >  8:86387/1‑149 (MQ=255)                        ttGAACCAGCCGGTGAGCTGGCCCAGTTCATCCTGGTGGGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACcag                                                                                                                           <  3:133545/149‑1 (MQ=255)                            aCCAGCCGGTGAGCTGGCCCAGTTCATCCTGGTGGGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACcagcag                                                                                                                        >  7:260777/1‑148 (MQ=255)                              cAGCCGGTGAGCTGGCCCAGTTCATCCTGGTGGGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAgcagca                                                                                                                      >  1:97625/1‑148 (MQ=255)                               aGCCGGTGAGCTGGCCCAGTTCATCCTGGTGGGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCaa‑a                                                                                                                   >  1:364353/1‑149 (MQ=255)                               aGCCGGTGAGCTGGCCCAGTTCATCCTGGTGGGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCaa‑a                                                                                                                   <  8:320712/149‑1 (MQ=255)                                gCCGGTGAGCTGGCCCAGTTCATCCTGGTGGGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑Ac                                                                                                                  >  7:203738/1‑149 (MQ=255)                                    gTGAGCTGGCCCAGTTCATCCTGGTGGGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCCGCAGCAC‑ACCGGc                                                                                                              >  2:298498/1‑149 (MQ=255)                                    gTGAGCTGGCCCAGTTCATCCTGGTGGGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGc                                                                                                              <  8:80408/149‑1 (MQ=255)                                            gCCCAGTTCATCCTGGTGGGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCg                                                                                                      >  7:189549/1‑149 (MQ=255)                                               cAGTTCATCCTGGTGGGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAg                                                                                                         >  2:21728/1‑143 (MQ=255)                                               cAGTTCATCCTGGTGGGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAg                                                                                                         <  1:21728/143‑1 (MQ=255)                                                aGTTCATCCTGGTGGGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGcc                                                                                                  <  8:220346/149‑1 (MQ=255)                                                   tCATCCTGGTGGGCGTAGTCCAGGCGACTGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCTATAGCCGTGCCaa                                                                                                <  4:125604/148‑1 (MQ=255)                                                    cctCCTGGTGGGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAg                                                                                               <  6:210629/146‑1 (MQ=255)                                                     aTCCTGGTGGGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGc                                                                                             >  8:265005/1‑149 (MQ=255)                                                     aTCCTGGTGGGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGc                                                                                             <  8:260777/149‑1 (MQ=255)                                                      tCCTGGTGGGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCcgcgcgc                                                                                                                                          <  8:333611/104‑1 (MQ=255)                                                        ctgtggggCGTAGGCCAGGCGACGGGTAAGGTCGGCTTCGCCACTGGCAATGTCTTCCAGGCGGGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCt                                                                                           <  5:122837/143‑1 (MQ=255)                                                           gtggGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTAt                                                                                         <  8:91087/147‑1 (MQ=255)                                                           gtggGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATc                                                                                        <  4:294817/148‑1 (MQ=255)                                                               gCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATcagcag                                                                                   >  1:321959/1‑149 (MQ=255)                                                                    gTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTg                                                                               <  7:239352/148‑1 (MQ=255)                                                                            gACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTg                                                                      <  5:342732/149‑1 (MQ=255)                                                                                 gTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCATGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCTGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGtt                                                                 <  5:185821/149‑1 (MQ=255)                                                                                    aGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGTTTGGCGTTCTg                                                              >  6:260063/1‑149 (MQ=255)                                                                                    aGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTg                                                              <  2:97625/149‑1 (MQ=255)                                                                                    aGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTg                                                              <  8:48802/149‑1 (MQ=255)                                                                                      gTCGCCTTCTCCACTTGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGACGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGc                                                                                                              <  3:355357/99‑1 (MQ=255)                                                                                      gTCGCCTTCGCCAATCGCAAAGTCTTCCAGGCGTGCAGCCACCGCCAGGATTGCCCGGG‑TAACGCCGCGCGCCGTCAGCCACACCAGCAGCAA‑ACCCGc                                                                                                              >  4:355357/1‑99 (MQ=255)                                                                                        cGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCGTGGGGGGGGACAACGGGGGCGATAGCCGTGCCAAGGCCTATAAGCAGGCTGGTGAGGTTGGCGTTGTgggt                                                           >  1:123496/1‑147 (MQ=255)                                                                                          ccTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATg                                                        >  7:32882/1‑149 (MQ=255)                                                                                           cTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATgg                                                       <  7:265005/149‑1 (MQ=255)                                                                                               gCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCAt                                                   <  6:136059/149‑1 (MQ=255)                                                                                                ccACTGGCAATGTCTTCCAGGCGTGCAGGCACGGCCAGGATTGGCCGGG‑TAAGGCCGGGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGGTGGTGAGGTTGGCGTTCTGGTTATGGGCATc                                                  <  6:122284/149‑1 (MQ=255)                                                                                                      gCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTgg                                                             >  6:220639/1‑132 (MQ=255)                                                                                                      gCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTgg                                                             <  5:220639/132‑1 (MQ=255)                                                                                                       cAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGgcgc                                           <  7:86387/149‑1 (MQ=255)                                                                                                         aTGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTg                                         >  4:118620/1‑149 (MQ=255)                                                                                                         aTGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTg                                         >  6:13331/1‑149 (MQ=255)                                                                                                          tGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTgg                                        <  8:192452/149‑1 (MQ=255)                                                                                                            tCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCa                                                 <  4:57297/138‑1 (MQ=255)                                                                                                            tCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCa                                                 >  3:57297/1‑138 (MQ=255)                                                                                                              ttCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGtt                                      >  1:207069/1‑147 (MQ=255)                                                                                                               tCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAg                                   >  5:371990/1‑149 (MQ=255)                                                                                                                ccAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAacgcctggaagacattgccagtggcgaaggcgaccttacccgtcgcctggactacgcccaccaggatgaactgggccagctcaccggctggttcaaccgtttcctcgacaagtt                                   <  6:364270‑M2/149‑115 (MQ=255)                                                                                                                ccAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGa                                    <  8:189549/147‑1 (MQ=255)                                                                                                                 cAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAacgcctggaagacattgccagtggcgaaggcgaccttacccgtcgcctggactacgcccaccaggatgaactgggccagctcaccggctggttcaaccgtt                                                <  3:213945‑M2/135‑102 (MQ=255)                                                                                                                 cAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAacgcctggaagacattgccagtggcgaaggcgaccttacccgtcgcctggactacgcccaccaggatgaactgggccagctcaccggctggttcaaccgtt                                                >  4:213945‑M2/1‑34 (MQ=255)                                                                                                                 cAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAgg                                  <  2:321959/148‑1 (MQ=255)                                                                                                                   ggCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGc                                >  6:322837/1‑148 (MQ=255)                                                                                                                      gTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGa                              >  3:251497/1‑147 (MQ=255)                                                                                                                      gTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGAca                            <  6:288085/149‑1 (MQ=255)                                                                                                                          aGCCACGGCCAGGATTGGCCGGGCTGcacgcctggaagacattgccagtggcgaaggcgaccttacccgtcgcctggactacgcccaccaggatgaactgggccagctcaccggctggttcaaccgtttcctcgacaagttgcaaccgg                          <  5:139468‑M2/149‑124 (MQ=255)                                                                                                                          aGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAACGACTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGAcagcag                        >  2:254916/1‑149 (MQ=255)                                                                                                                           gCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATGAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAgg                       <  8:32882/149‑1 (MQ=255)                                                                                                                            ccACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGc                                                     >  6:185473/1‑118 (MQ=255)                                                                                                                            ccACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGc                                                     <  5:185473/118‑1 (MQ=255)                                                                                                                            ccACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAggg                      >  7:117374/1‑149 (MQ=255)                                                                                                                            ccACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAggg                      >  2:157145/1‑149 (MQ=255)                                                                                                                              aCGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGc                    <  8:117374/149‑1 (MQ=255)                                                                                                                                 gCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCCTg                 <  2:123496/149‑1 (MQ=255)                                                                                                                                 gCCAGGATTGGCAGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCCTg                 <  8:265994/149‑1 (MQ=255)                                                                                                                                  ccAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGtt                                      >  5:344279/1‑127 (MQ=255)                                                                                                                                  ccAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGtt                                      <  6:344279/127‑1 (MQ=255)                                                                                                                                                g‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCCTGCAGCACGCTTTCCgg  <  8:203738/149‑1 (MQ=255)                                                                                                                                                  tAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCCTGCAGCACGCTTTCCgg  >  4:234932/1‑148 (MQ=255)                                                                                                                                                   |                                                                                                                                                    GTTGCAACTTGTCGAGGAAACGGTTGAACCAGCCGGTGAGCTGGCCCAGTTCATCCTGGTGGGCGTAGTCCAGGCGACGGGTAAGGTCGCCTTCGCCACTGGCAATGTCTTCCAGGCGTGCAGCCACGGCCAGGATTGGCCGGG‑TAACGCCGCGCGCGGTCAGCCACACCAGCAGCAA‑ACCGGCGATAGCCGTGCCAAGGCCTATCAGCAGGCTGGTGAGGTTGGCGTTCTGGTTATGGGCATCAAGGCGCTGGTTGAGGGCGACAGCAGGGGCCTGCAGCACGCTTTCCGG  >  NC_002947/1404460‑1404751

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.