New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1499507 =	17 (0.280)	10 (0.180)	4/240	NT	17.6%	intergenic (+84/‑80)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
	?	NC_002947	= 6060505	78 (1.420)					intergenic (+141/+40)	PP_5311/PP_5312	signal transduction protein/hypothetical protein

CGCAGTTTCCTGCGCCGCGTCATGGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCG‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1499661‑1499507 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggagcg‑gGCGTGCCCGCGAA‑ACAAGC‑GACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAG‑‑TCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTAATGCTTAATGC  <  NC_002947/6060505‑6060358                                                                                                                                                                                                                                                                                                                       CGCAGTTTCCTGCGCCGCGTCATGGAAGTAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGG                                                                                                                                                                  >  1:216436/1‑149 CGCAGTTTCCTGCGCCGCGTCATGGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGG                                                                                                                                                                  <  8:76594/149‑1 CGCAGTTTCCTGCGCCGCGTCATGGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGG                                                                                                                                                                  <  4:319020/149‑1 CGCAGTTTCCTGCGCCGCGTCATGGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCATTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGG                                                                                                                                                                  <  1:313046/149‑1          CTGCGCCGCGTCATGGAAGAATGAGGTACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCG‑GGC                                                                                                                                                         <  3:228207/148‑1          CTGCGCCGCGTCATGGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCG‑GGC                                                                                                                                                         <  6:347509/148‑1           TGCGCCGCGTCATGGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCG‑GGCGT                                                                                                                                                       >  3:27905/1‑149               CCGCGTCATGGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGT                                                                                                                                                                    <  1:222503/133‑1               CCGCGTCATGGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGT                                                                                                                                                                    >  2:222503/1‑133                  CGTCATGGAAGAAGTCGGGACGTTTCAGCTCTGCTAGATAGCGTTCTAAGGGAGTCCTGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCG‑GGCGTGCCCGCG                                                                                                                                                <  5:235527/149‑1                    TCATTGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGTCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCG‑GGCACGCCCGCtcc                                                                                                                                              <  5:262252/149‑4                    TCATGGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGcg                                                                                                                                                                   <  8:84053/129‑3                    TCATGGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGcg                                                                                                                                                                   >  7:84053/1‑127                        GGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCG‑GGCGTGCCCGCGAAcacc                                                                                                                                          >  7:225549/1‑145                                              ATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGG                                                                                                                                                                  >  5:197831/1‑104                                              ATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGG                                                                                                                                                                  <  6:197831/104‑1                                                   CTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGCGGCGTGCCCGCGAACACCGGC‑AAAGCCGGTGCATGGCACCGGC                                                                                                                <  1:72447/148‑1                                                   CTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCG‑GGCGTGCCCGCGAA‑ACAGGCTGCCG‑CGGTGCATGGCACCGGCTTt                                                                                                             <  7:52161/149‑2                                                   CTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCG‑GGCGTGCCCGCGAA‑ACAGGC‑GCCG‑CGGTGCATGGCACCGGggtg                                                                                                             >  8:52161/1‑144                                                       ATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCG‑GGCGTGCCCGCGAA‑ACAGGC‑GCCG‑CGGTGCATGGCACCGGCTTTGCCGG                                                                                                        >  2:317476/1‑149                                                            GTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCG‑GGCGTGCCCGCGAA‑ACAGGC‑GCCG‑CGGTGCATGGCACCGGCTTTGCCGGTGTTC                                                                                                   <  3:305016/149‑1                                                             TTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCG‑GGCGTGCCCGCGAA‑ACAGGC‑GCCG‑CGGTGCATGGCACCGGCTTTGCCGGTGTTCG                                                                                                  <  1:317476/149‑1                                                                      AGTCATGATTCGTTAGCGAGGCAACAAAAACCGGGCCGGCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCG‑GGCGTGCCCGCGAA‑ACAGGC‑GCCG‑CGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGC                                                                                         <  7:191629/149‑1                                                                                                                                                  GTGGGAGCG‑GGCGTGCCCGCGAA‑ACAAGC‑GACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAG‑‑TCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTAAT           >  2:325499/1‑149                                                                                                                                                   TGGGAGCG‑GGCGTGCCCGCGAA‑ACAAGC‑GACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAG‑‑TCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTAATG          >  1:54125/1‑149                                                                                                                                                   TGGGAGCG‑GGCGTGCCCGCGAA‑ACAAGC‑GACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAG‑‑TCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTAA            <  4:114308/147‑1                                                                                                                                                     GGAGCG‑GGCGTGCCCGCGAA‑ACAAGC‑GACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCTGGCAAGCCCGCTCCCACAGCCTCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTAAT           <  1:302954/148‑1                                                                                                                                                       AGCG‑GGCGTGCCCGCGAA‑ACAAGC‑GACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAG‑‑TCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTAATGCTTA      <  4:249941/149‑1                                                                                                                                                        cgG‑GGCGTGCCCGCTAA‑ACACGC‑TACG‑GGGTGCATGGCACGGGCTGCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAG‑‑TCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTAATGCTTAA     <  4:3912/147‑1                                                                                                                                                            GGCGTGCCCGCGAA‑ACAAGC‑GACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAG‑‑TCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTAATGCTTAATGC  >  4:290816/1‑149                                                                                                                                                                                                                                                                                                                       CGCAGTTTCCTGCGCCGCGTCATGGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCG‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1499661‑1499507 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggagcg‑gGCGTGCCCGCGAA‑ACAAGC‑GACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAG‑‑TCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTAATGCTTAATGC  <  NC_002947/6060505‑6060358

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.