| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1499507 = | 17 (0.280) | 10 (0.180) | 4/240 | NT | 17.6% | intergenic (+84/‑80) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| ? | NC_002947 | = 6060505 | 78 (1.420) | intergenic (+141/+40) | PP_5311/PP_5312 | signal transduction protein/hypothetical protein | |||||
CGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCACGGCTTTGCCGGTGTT‑TCGGGCACG‑C‑CGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGACGCGGCGCAG > NC_002947/1499360‑1499652 | cGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAcg‑c < 4:57802/149‑1 (MQ=37) gcattaagcattaacacatagcctgcgggagcaactgtcttgctcaatttctaacagctggcgcgattttggactgtgggagcgggcttgcccgcgaacaccggcgaagccggtgccatgcaccgcgtcgcttgtttcgcgggcacgcc > 4:290816‑M1/149‑149 (MQ=255) ttaagcattaacacatagcctgcgggagcaactgtcttgctcaatttctaacagctggcgcgattttggactgtgggagcgggcttgcccgcgaacaccggcgcagcccgtgccatgcaccccgtagcgtgtttagcgggcacgcc‑ccg < 4:3912‑M1/4‑3 (MQ=255) taagcattaacacatagcctgcgggagcaactgtcttgctcaatttctaacagctggcgcgattttggactgtgggagcgggcttgcccgcgaacaccggcgaagccggtgccatgcaccgcgtcgcttgtttcgcgggcacgcC‑CGC‑t < 4:249941‑M1/5‑1 (MQ=255) aGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAcg‑c‑ccgctc < 6:266414/149‑6 (MQ=25) attaacacatagcctgcgggagcaactgtcttgctcaatttctaacagctggcgcgattttggaggctgtgggagcgggcttgccagcgaacaccggcgaagccggtgccatgcaccgcgtcgcttgtttcgcgggcacgcC‑CGC‑Tcc < 1:302954‑M1/7‑1 (MQ=255) cattaacacatagcctgcgggagcaactgtcttgctcaatttctaacagctggcgcgattttggactgtgggagcgggcttgcccgcgaacaccggcgaagccggtgccatgcaccgcgtcgcttgtttcgcgggcacgcC‑CGC‑TCCca > 1:54125‑M1/141‑149 (MQ=255) attaacacatagcctgcgggagcaactgtcttgctcaatttctaacagctggcgcgattttggactgtgggagcgggcttgcccgcgaacaccggcgaagccggtgccatgcaccgcgtcgcttgtttcgcgggcacgcC‑CGC‑TCCcac > 2:325499‑M1/140‑149 (MQ=255) ttaacacatagcctgcgggagcaactgtcttgctcaatttctaacagctggcgcgattttggactgtgggagcgggcttgcccgcgaacaccggcgaagccggtgccatgcaccgcgtcgcttgtttcgcgggcacgcC‑CGC‑TCCca < 4:114308‑M1/9‑1 (MQ=255) gTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCGCCGGCTTTGCCGGTGTTCGCGGGCACGCC‑CGC‑TCCca > 1:253659/1‑147 (MQ=25) gCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGGCCGCGAAACAGGCCCCGCGGTGCATGGCACCCGCTTTGCCGGTGTTAGCGGGCCCG‑C‑CCCGTCCCACAGACt > 8:241834/1‑148 (MQ=255) ggCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCCGCGTTTCCGGTGTTAGCGGGCACGCC‑CGC‑GCCCACAGACTGAt > 7:40823/1‑149 (MQ=25) aTTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCC‑CGC‑TCCCACAGACTGATTGcc < 3:118742/149‑1 (MQ=21) cTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCGCCGGCTTTGCCGGTGTTCGCGGGCACGCC‑CGC‑TCCCACAGACTGATTGCCATTAAGCg < 2:253659/148‑1 (MQ=25) aCGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTTCCCCCGCAACAGGCGCCCCGGGGCAATGCCCCCGCGTTGCCCGTGTTAGCGGGCCCGCC‑CGC‑GCCCACAGACGGATTGCCATTAAGACGGcc > 2:216436/1‑148 (MQ=255) gAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCC‑CGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTAt < 8:269974/149‑1 (MQ=21) ggACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCC‑CGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGtt < 1:19222/149‑1 (MQ=21) ggCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCC‑CGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTttgtt < 7:80834/149‑1 (MQ=21) ccAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCAAGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCC‑CGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCGATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTc > 1:273625/1‑149 (MQ=21) ccAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCAAGGCACCGGCGTTGCCGGTGTTAGCGGGCACGCC‑CGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACCGTGACGGCCCGGTTTTTGTTGGCTc > 1:278665/1‑149 (MQ=21) gggggggCGCGGGCGTGCCCGCTAAACTGGCGCCGGGGTGCATGGCACGGGTTTTGCGGGTGTTCGCGGGCACGCC‑CGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTaa < 4:7328/145‑1 (MQ=25) gCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCC‑CGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCAt > 4:27905/1‑149 (MQ=25) gcgtgcccgcgaacaccggcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcC‑CGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGCCGGCCCGGTTTTTGTTGCCTCGCTAACGAATCATGACt < 7:191629‑M1/86‑1 (MQ=255) cGTGCCCGCGAAACAGGCGCCGCGTTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCC‑CGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTc < 7:241834/149‑1 (MQ=37) ccGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCC‑CGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCt > 6:302744/1‑147 (MQ=37) cgaacaccggcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcC‑CGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGaa < 1:317476‑M1/95‑1 (MQ=255) gaacaccggcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcC‑CGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAAc < 3:305016‑M1/96‑1 (MQ=255) ccggcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcC‑CGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTAt > 2:317476‑M1/49‑149 (MQ=255) ggCGCCGCGGGGCATGGCACGGGCTTTGCCGGTGTTCGCGGGCACGCC‑CGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATc < 6:18620/149‑1 (MQ=37) gccgcGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCC‑CGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAg > 4:138809/1‑149 (MQ=37) aaagccggtgccatgcaccgcggcagcctgtttcgcgggcacgcC‑CGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAg < 7:52161‑M1/105‑1 (MQ=255) caccccggtgccatgcaccgcggcgcctgtttcgcgggcacgcC‑CGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAg > 8:52161‑M1/44‑148 (MQ=255) gccggtgccatgcaccggctttgccggtgttcgcgggcacgcCGCGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAg < 1:72447‑M1/106‑1 (MQ=255) ggtgttcgcgggcacgcC‑CGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTcc > 7:225549‑M1/18‑149 (MQ=255) ggagcgggcgtgcC‑CGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGACTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCAATGa < 5:262252‑M1/136‑1 (MQ=255) cgcgggcacgcC‑CGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCAGGACTCCCTTAGAACGCTATCTAGCAGAGCTGAAACGTCCCGACTTCTTCCATGAcg < 5:235527‑M1/138‑1 (MQ=255) acgcC‑CGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGACGCGGCGCa > 3:27905‑M1/5‑149 (MQ=255) gcC‑CGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGACGCGGCGCAg < 6:347509‑M1/146‑1 (MQ=255) gcC‑CGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTACCTCATTCTTCCATGACGCGGCGCAg < 3:228207‑M1/146‑1 (MQ=255) | CGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCACGGCTTTGCCGGTGTT‑TCGGGCACG‑C‑CGC‑TCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGACGCGGCGCAG > NC_002947/1499360‑1499652 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |