New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1628248	60 (1.000)	4 (0.070)	4/252	NT	6.5%	coding (361/591 nt)	mucA	sigma factor AlgU negative regulator
	?	NC_002947	= 1628296	57 (0.990)					coding (409/591 nt)	mucA	sigma factor AlgU negative regulator

GACGAAGCCGTGCCAGCCAAGGTCAAGAAAGGCCCTTGGCGCAGCATTGGCCGTCTGGCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1628095‑1628248 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcctgCCAAAACGGCCGGGCCTTGCGCTTGTGGCACACTCAGGCCCTGTTGGACAGGCTGCTGGGCAGCAAGCTCTGCACCCGTGATTTCGTCCTGGTTGTACATACGCACACCGGCCAGTACCGCGACGGTAACCGAGGCGGCTACCGC  <  NC_002947/1628296‑1628152                                                                                                                                                                                                                                                                                                             GACGAAGCCGTGCCAGCCAAGGTCAAGAAAGGCCCTTGGCGCAGCATTGGCCGTCTGGCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCA                                                                                                                                                        <  2:28292/149‑1     AAGCCGTGCCAGCCAAGGTCAAGAAAGGCCCTTGGCGCAGCATTGGCCGTCTGGCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGCCT                                                                                                                                                    <  6:174027/149‑1      AGCCGTGCCAGCCAAGGTCAAGAAAGGCCCTTGGCGCAGCATTGGCCGTCTGGCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGCCTG                                                                                                                                                   <  3:321117/149‑1                GCCAAGGTCAAGAAAGGCCCTTGGCGCAGCATTGGCCGTCTGGCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGCCTGCCAAAACGGC                                                                                                                                         >  3:227343/1‑149                                                            GGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGCCTGCCAAAACGGCCGGGCCTTGCGCTTGTGGCACACTCAGGCCCTGTTGGACAGGCT                                                                                             <  1:258017/149‑1                                                             GTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC                                                                                                                                                      <  8:22394/91‑1                                                                GCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGCCTGCCAAAACGGCCGGGCCTTGCGCTTGTGGCACACTCAGGCCCTGTTGGACAGGCTGCT                                                                                          <  7:72211/148‑1                                                                    CCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGCCTGCCAAAACGGCCGGGCCTTGCGCTTGTGGCACACTCAGGCCCTGTTGGACAGGCTGCTGGGCA                                                                                     <  4:227343/149‑1                                                                                                                                                         TGCCAAAACGGCCGGGCCTTGCGCTTGTGGCACACTCAGGCCCTGTTGGACAGGCTGCTGGGCAGCAAGCTCTGCACCCGTGATTTCGTCCTGGTTGTACATACGCACACCGGCCAGTACCGCGACGGTAACCGAGGCGGCTACCGC  >  5:72874/1‑147                                                                                                                                                                                                                                                                                                             GACGAAGCCGTGCCAGCCAAGGTCAAGAAAGGCCCTTGGCGCAGCATTGGCCGTCTGGCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1628095‑1628248 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcctgCCAAAACGGCCGGGCCTTGCGCTTGTGGCACACTCAGGCCCTGTTGGACAGGCTGCTGGGCAGCAAGCTCTGCACCCGTGATTTCGTCCTGGTTGTACATACGCACACCGGCCAGTACCGCGACGGTAACCGAGGCGGCTACCGC  <  NC_002947/1628296‑1628152

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.