New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1628248	60 (1.000)	4 (0.070)	4/252	NT	6.5%	coding (361/591 nt)	mucA	sigma factor AlgU negative regulator
	?	NC_002947	= 1628296	57 (0.990)					coding (409/591 nt)	mucA	sigma factor AlgU negative regulator

AGCCGTGCCAGCCAAGGTCAAGAAAGGCCCTTGGCGCAGCATTGGCCGTCTGGCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAA‑TGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACC  >  NC_002947/1628100‑1628392                                                                                                                                                      |                                                                                                                                                  aGCCGTGCCAGCCAAGGTCAAGAAAGGCCCTTGGCGCAGCATTGGCCGTCTGGCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTG                                                                                                                                                   <  3:321117‑M1/149‑1 (MQ=255)  gCCGTGCCAGCCAAGGTCAAGAAAGGCCCTTGGCGCAGCATTGGCCGTCTGGCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGt                                                                                                                                                  >  8:144647/1‑149 (MQ=255)    cGTGCCAGCCAAGGTCAAGAAAGGCCCTTGGCGCAGCATTGGCCGTCTGGCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTcc                                                                                                                                                <  6:245694/149‑1 (MQ=255)    cGTGCCAGCCAAGGTCAAGAAAGGCCCTTGGCGCAGCATTGGCCGTCTGGCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTcc                                                                                                                                                <  3:287279/149‑1 (MQ=255)      tGCCAGCCAAGGTCAAGAAAGGCCCTTGGCGCAGCATTGGCCGTCTGGCGGTAGCCGCCTCGGTTACAGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCaa                                                                                                                                              >  2:60990/1‑149 (MQ=255)       gccagccaAGGTCAAGAAAGGCCCTTGGCGCAGCATTGGCCGTCTGGCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCaa                                                                                                                                              >  1:55246/1‑148 (MQ=255)        ccagccaAGGTCAAGAAAGGCCCTTGGCGCAGCATTGGCCGTCTGGCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCaa                                                                                                                                              >  8:331798/1‑147 (MQ=255)           gccaAGGTCAAGAAAGGCCCTTGGCGCAGCATTGGCCGTCTGGCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGccaaaacggc                                                                                                                                         >  3:227343‑M1/1‑139 (MQ=255)             caAGGTCAAGAAAGGCCCTTGGCGCAGCATTGGCCGTCTGGCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGcc                                                                                                                                       <  6:95864/149‑1 (MQ=255)                 gTCAAGAAAGGCCCTTGGCGCAGCATTGGCCGTCTGGCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAg                                                                                                                                   >  8:288491/1‑149 (MQ=255)                 gTCAAGAAAGGCCCTTGGCGCAGCATTGGCCGTCTGGCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAg                                                                                                                                   >  4:193001/1‑149 (MQ=255)                  tCAAGAAAGGCCCTTGGCGCAGCATTGGCCGTCTGGCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGTGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAgt                                                                                                                                  <  3:349868/149‑1 (MQ=255)                    aaGAAAGGCCCTTGGCGCAGCATTGGCCGTCTGGCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAgtgt                                                                                                                                >  1:230716/1‑149 (MQ=255)                    aaGAAAGGCCCTTGGCGCAGCATTGGCCGTCTGGCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAgtgt                                                                                                                                <  7:301914/149‑1 (MQ=255)                      gAAAGGCCCTTGGCGCAGCATTGGCCGTCTGGCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGc                                                                                                                              <  6:336688/149‑1 (MQ=255)                        aaGGCCCTTGGCGCAGCATTGGCCGTCTGGCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCca                                                                                                                            <  4:7444/149‑1 (MQ=255)                            cccTTGGCGCAGCATTGGCCGTCTGGCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAg                                                                                                                        >  8:153807/1‑149 (MQ=255)                             ccTTGGCGCAGCATTGGCCGTCTGGCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCATC‑CTGTCAAACAGGGCCTGAGTGTTCCACAAgc                                                                                                                       >  4:205635/1‑149 (MQ=255)                              cTTGGCGCAGCATTGGCCGTCTGGCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCGTGAGTGTGCCACAAgcg                                                                                                                      <  2:55246/149‑1 (MQ=255)                                   cgcAGCATTGGCCGTCTGGCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGGGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAgg                                                                                                                 <  6:302090/149‑1 (MQ=255)                                     cagcaTTGGCCGTCTGGCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGcc                                                                                                               >  3:316294/1‑149 (MQ=255)                                      agcaTTGGCCGTCTGGCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGccc                                                                                                              <  2:230716/149‑1 (MQ=255)                                       gcaTTGGCCGTCTGGCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCg                                                                                                             <  8:150780/149‑1 (MQ=255)                                          ttGGCCGTCTGGCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCca                                                                                                                            >  1:372195/1‑131 (MQ=255)                                          ttGGCCGTCTGGCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCca                                                                                                                            <  2:372195/131‑1 (MQ=255)                                              ccGTCTGGCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGttt                                                                                                      <  8:111269/149‑1 (MQ=255)                                                gTCTGGCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTg                                                                                                    >  6:270706/1‑149 (MQ=255)                                                 tCTGGCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTgg                                                                                                   <  1:60990/149‑1 (MQ=255)                                                     gCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGca                                                                                                 >  5:72874‑M2/1‑145 (MQ=255)                                                       ggTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGccaaaacggccgggccttgcgcttgtggcacactcaggccctgttggacaggct                                                                                             <  1:258017‑M1/149‑55 (MQ=255)                                                           gccgccTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGccaaaacggccgggccttgcgcttgtggcacactcaggccctgttggacaggctgct                                                                                          <  7:72211‑M1/148‑58 (MQ=255)                                                           gccgccTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCtata                                                                                          <  6:126422/148‑1 (MQ=255)                                                           gccgccTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAg                                                                                         <  3:193001/149‑1 (MQ=255)                                                               ccTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGccaaaacggccgggccttgcgcttgtggcacactcaggccctgttggacaggctgctgggca                                                                                     <  4:227343‑M1/149‑63 (MQ=255)                                                               ccTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCAGAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGaa                                                                                     <  6:269606/149‑1 (MQ=255)                                                                 tCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAg                                                                                   >  4:174336/1‑149 (MQ=255)                                                                  cGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAg                                                                                   >  5:214643/1‑148 (MQ=255)                                                                        ccGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGa                                                                             <  1:246561/148‑1 (MQ=255)                                                                        ccGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGa                                                                             <  4:199203/148‑1 (MQ=255)                                                                        ccGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAg                                                                            <  6:207830/149‑1 (MQ=255)                                                                         cGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAg                                                                            >  5:35622/1‑148 (MQ=255)                                                                          gTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGc                                                                           >  1:139752/1‑148 (MQ=255)                                                                          gTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCa                                                                          <  7:331798/149‑1 (MQ=255)                                                                          gTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCa                                                                          <  6:35622/149‑1 (MQ=255)                                                                             gcgGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAacc                                                                       <  1:64067/149‑1 (MQ=255)                                                                                gTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAaccgac                                                                    >  3:207472/1‑149 (MQ=255)                                                                                 tACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAaccgacc                                                                   >  6:62917/1‑149 (MQ=255)                                                                                          gtgtGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGggccaa‑tg                                                         <  4:207472/149‑1 (MQ=255)                                                                                                gTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGCGCAACCGACCGggccaa‑tggccaat                                                   >  6:79990/1‑149 (MQ=255)                                                                                                gTATGTACAACCAGGAAGAAATAAAGTCTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTTCCACAAGAGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGggccaa‑tggccaat                                                   >  3:253906/1‑149 (MQ=255)                                                                                                    gTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGa                                                                                                                                    <  4:358607/65‑1 (MQ=255)                                                                                                    gTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGa                                                                                                                                    >  3:358607/1‑65 (MQ=255)                                                                                                     tACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAA‑TGGCCAATGGCGt                                              >  7:154895/1‑149 (MQ=255)                                                                                                        aaCCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAA‑TGGCCAATGGCGtgct                                           >  7:289222/1‑149 (MQ=255)                                                                                                         aCCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAA‑TGGCCAATGGCGtgctg                                          <  4:316294/149‑1 (MQ=255)                                                                                                            aGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAA‑TGGCCAATGGCGtgctg                                          >  8:290434/1‑146 (MQ=255)                                                                                                             ggACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAA‑TGGCCAATGGCGTGCTGCata                                      <  7:153807/149‑3 (MQ=255)                                                                                                             ggACGAAATCACGGCTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAACGCAGTGAGCAAACGACAGGGCCAA‑TGGCCAATGGCGTGcagcag                                       >  7:142275/1‑148 (MQ=255)                                                                                                              gACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAA‑TGGCCAATGGCGTGCTGCAGaa                                     <  3:174336/149‑1 (MQ=255)                                                                                                               aCGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCcaa‑tggccaatggc                                                <  2:3453/137‑1 (MQ=255)                                                                                                               aCGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCcaa‑tggccaatggc                                                >  1:3453/1‑137 (MQ=255)                                                                                                                   aaTCACGGGTGCAGAGCTTGCTGCCCAGCAGCTCTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAA‑TGGCCAATGGCGTGCTGCAGAACCAg                                 >  1:46238/1‑149 (MQ=255)                                                                                                                   aaTCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAA‑TGGCCAATGGCGAGCTGCAGAACCAgg                                >  2:293487/1‑149 (MQ=255)                                                                                                                       aCGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAA‑TGGCCAATGGCGTGCTGCAGAACCAGGCCgg                            <  7:144647/149‑1 (MQ=255)                                                                                                                       aCGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAA‑TGGCCAATGGCGTGCTGCAGAACCAGGCCg                             <  3:236621/148‑1 (MQ=255)                                                                                                                        cGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAA‑TGGCCAATGGCGTGCTGCAGAACCAGGCCGGc                           >  7:11221/1‑149 (MQ=255)                                                                                                                           gTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAA‑TGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTgg                        <  2:139752/149‑1 (MQ=255)                                                                                                                           gTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAA‑TGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTgg                        <  8:154895/149‑1 (MQ=255)                                                                                                                                  gCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAA‑TGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGc                 <  7:288491/149‑1 (MQ=255)                                                                                                                                      gctgcCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAA‑TGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGt               <  6:214643/147‑1 (MQ=255)                                                                                                                                        tgcCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGcaggctgctgggcagcaagctctgcacccgtgatttcgtcctggttgtacatacgcacaccggccagtaccgcgacggtaaccgagg            <  4:227343‑M2/149‑88 (MQ=255)                                                                                                                                        tgcCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAA‑TGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGc           >  8:121865/1‑149 (MQ=255)                                                                                                                                             agcagc‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGcaggctgctgggcagcaagctctgcacccgtgatttcgtcctggttgtacatacgcacaccggccagtaccgcgacggtaaccgaggcggc        <  7:72211‑M2/148‑92 (MQ=255)                                                                                                                                             agcagc‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAA‑TGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGc      >  8:169466/1‑149 (MQ=255)                                                                                                                                                agc‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGcaggctgctgggcagcaagctctgcacccgtgatttcgtcctggttgtacatacgcacaccggccagtaccgcgacggtaaccgaggcggctacc    <  1:258017‑M2/149‑96 (MQ=255)                                                                                                                                                  ggcTGTCCAACCGGGCCGGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTTGCAGGCTATAGTGCAAGCAGTGAGCAACCGACCGGGCCAATTGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTAc   <  1:293487/147‑1 (MQ=255)                                                                                                                                                     tGccaaaacggccgggccttgcgcttgtggcacactcaggccctgttggacaggctgctgggcagcaagctctgcacccgtgatttcgtcctggttgtacatacgcacaccggccagtaccgcgacggtaaccgaggcggctaccgc  >  5:72874‑M1/1‑2 (MQ=255)                                                                                                                                                      |                                                                                                                                                  AGCCGTGCCAGCCAAGGTCAAGAAAGGCCCTTGGCGCAGCATTGGCCGTCTGGCGGTAGCCGCCTCGGTTACCGTCGCGGTACTGGCCGGTGTGCGTATGTACAACCAGGACGAAATCACGGGTGCAGAGCTTGCTGCCCAGCAGC‑CTGTCCAACAGGGCCTGAGTGTGCCACAAGCGCAAGGCCCGGCCGTTTTGGCAGGCTATAGTGAAAGCAGTGAGCAACCGACCGGGCCAA‑TGGCCAATGGCGTGCTGCAGAACCAGGCCGGCTGGGATCAGCGTCTGCCAGGCTACC  >  NC_002947/1628100‑1628392

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.