New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2744589	44 (0.730)	3 (0.050)	3/252	NT	6.3%	coding (128/696 nt)	PP_2399	hypothetical protein
	?	NC_002947	= 2744625	47 (0.820)					coding (164/696 nt)	PP_2399	hypothetical protein

CAATGCGCTGCCGGAGGGCAAGCAGATGAATGAGACCCTGCGTGCGCAGCAGTATGCCTTGGCCCGTCACCTGCGCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2744437‑2744589 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgcATCACCGGGAAGCTGCCAGCCAGCAAGCCTTCGATGGCGCCATA  <  NC_002947/2744625‑2744582                                                                                                                                                                                                       CAATGCGCTGCCGGAGGGCAAGCAGATGAATGAGACCCTGCGTGCGCAGCAGTATGCCTTGGCCCGTCACCTGCGCGACCCACAGCGCCATGCCCCGCCGCCCGGCCTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTAGTTCTATG                                                  >  5:89330/1‑149                                             CGCAGCAGTATGCCTTGTCCCGTCACCTGCGCGTCCCACAGCGACATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCATCACCGGGAAGCTGCCAGCCAGCAAGCCTTCGATGGCGC      <  5:213191/149‑1                                                                           GCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCATCACCGGGAAGCTGCCAGCCAGCAAGCCTTCGATGGCGCCATA  <  3:290017/123‑1                                                                           GCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCATCACCGGGAAGCTGCCAGCCAGCAAGCCTTCGATGGCGCCATA  >  4:290017/1‑123                                                                                                                                                                                                       CAATGCGCTGCCGGAGGGCAAGCAGATGAATGAGACCCTGCGTGCGCAGCAGTATGCCTTGGCCCGTCACCTGCGCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2744437‑2744589 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgcATCACCGGGAAGCTGCCAGCCAGCAAGCCTTCGATGGCGCCATA  <  NC_002947/2744625‑2744582

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.