New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2744589	44 (0.730)	3 (0.050)	3/252	NT	6.3%	coding (128/696 nt)	PP_2399	hypothetical protein
	?	NC_002947	= 2744625	47 (0.820)					coding (164/696 nt)	PP_2399	hypothetical protein

GCTGCCGGAGGGCAAGCAGATGAATGAGACCCTGCGTGCGCAGCAGTATGCCTTGGCCCGTCACCTGCGCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCGAAATTGCCGAGACGTTCGTCGACTAC  >  NC_002947/2744443‑2744737                                                                                                                                                   |                                                                                                                                                     gcTGCCGGAGGGCAAGCAGATGAATGAGACCCTGCGTGCGCAGCAGTATGCCTTGGCCCGTCACCTGCGCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCa                                                                                                                                                    >  4:248796/1‑149 (MQ=255)  cTGCCGGAGGGCAAGCAGATGAATGAGACCCTGCGTGCGCAGCAGTATGCCTTGGCCCGTCACCTGCGCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCAt                                                                                                                                                   >  2:52340/1‑149 (MQ=255)   tGCCGGAGGGCAAGCAGATGAATGAGACCCTGCGTGCGCAGCAGTATGCCTTGGCCCGTCACCTGCGCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATc                                                                                                                                                  >  4:154866/1‑149 (MQ=255)                gCAGATGAATGAGACCCTGCGTGCGCAGCAGTATGCCTTGGCCCGTCACCTGCGCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAg                                                                                                                                              >  1:209164/1‑140 (MQ=255)                gCAGATGAATGAGACCCTGCGTGCGCAGCAGTATGCCTTGGCCCGTCACCTGCGCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAg                                                                                                                                              <  2:209164/140‑1 (MQ=255)                       aatgaGACCCTGCGTGCGCAGCAGTATGCCTTGGCCCGTCACCTGCGCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCa                                                                                                                               <  4:239810/148‑1 (MQ=255)                            gaCCCTGCGTGCGCAGCAGTATGCCTTGGCCCGTCACCTGCGCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTcc                                                                                                                         >  4:264705/1‑149 (MQ=255)                                 tgcgtgcgCAGCAGTATGCCTTGGCCCGTCACCTGCGCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCGGAAGGTTTACCGTGAGTTGTGCTATGGCGCCATCGAAGGCTTGGTGGCTGGCAGCTTCCCGGtc                                                                                                                    >  5:195481/1‑148 (MQ=255)                                       cgcAGCAGTATGCCTTGTCCCGTCACCTGCGCGTCCCACAGCGACATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCatcaccgggaagctgccagccagcaagccttcgatggcgc                                                                                                              <  5:213191‑M1/149‑41 (MQ=255)                                            cagTATGCCTTGGCCCGTCACCTGCGCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGc                                                                                                         <  2:371527/149‑1 (MQ=255)                                               tATGCCTTGGCCCGTCACCTGCGCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTAACGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGtt                                                                                                      >  4:52997/1‑149 (MQ=255)                                                 tGCCTTGGCCCGTCACCTGCGCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTgg                                                                                                    <  3:264705/149‑1 (MQ=255)                                                 tGCCTTGGCCCGTCACCTGCGCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGCTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTgg                                                                                                    <  4:142458/149‑1 (MQ=255)                                                   ccTTGGCCCGTCACCTGCGCGACCCCCAGCGCCATGCCCCGCCGCCCGGCGGCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGc                                                                                                  <  7:347753/149‑1 (MQ=255)                                                   ccTTGGCCCGTCACCTGCGCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGc                                                                                                  <  3:248796/149‑1 (MQ=255)                                                   ccTTGGCCCGTCACCTGCGCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGc                                                                                                  <  4:168900/149‑1 (MQ=255)                                                    cTTGGCCCGTCACCTGCGCGACCCACAGCGCCATGCCCCGCCGCCAGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCa                                                                                                                               >  6:252886/1‑119 (MQ=255)                                                     ttGGCCCGTCACCTGCGCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGc                                                                                                  >  5:33416/1‑147 (MQ=255)                                                     ttGGCCCGTCACCTGCGCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGc                                                                                                  >  1:24432/1‑147 (MQ=255)                                                       ggCCCGTCACCTGCGCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGag                                                                                               >  6:282396/1‑148 (MQ=255)                                                               aCCTGCGCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTg                                                                                       <  7:350130/148‑1 (MQ=255)                                                                     gcgACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCatcaccgggaagctgccagccagcaagccttcgatggcgccata                                                                                                          >  4:290017‑M1/1‑79 (MQ=255)                                                                     gcgACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCatcaccgggaagctgccagccagcaagccttcgatggcgccata                                                                                                          <  3:290017‑M1/123‑45 (MQ=255)                                                                               gcgcGATGCCCCGCCGCCTGGCGTCGAGGCCGGGCGCCTGATGGTTTACGGTGAGTTGTTCTATGGCGCCTTCGTAGGCTTGCTGGCTGGCAGCTTCCCgg                                                                                                                      <  3:187592/101‑1 (MQ=255)                                                                               gcgcCATCCCCCGCCGCCAGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGAGAGTTGTTCTATGGCGCCAACGAAGGCTTGCAGGCTGGCAGCTTCCCgg                                                                                                                      >  4:187592/1‑101 (MQ=255)                                                                                  ccATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCCGGCGTTGGGCGAGCAGCGCAGGCATGCCCGAGTACGTGAtt                                                                   >  2:299480/1‑149 (MQ=255)                                                                                       ccccGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTAc                                                              <  6:33416/149‑1 (MQ=255)                                                                                          cgccgcCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGcc                                                           <  4:201949/149‑1 (MQ=255)                                                                                                           gCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTTTGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGAc                                          >  1:181205/1‑149 (MQ=255)                                                                                                           gCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGagca                                                                                             >  3:50490/1‑98 (MQ=255)                                                                                                           gCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGagca                                                                                             <  4:50490/98‑1 (MQ=255)                                                                                                             ccGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGc                                        >  2:362069/1‑149 (MQ=255)                                                                                                                gcgcCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCgt                                     >  4:274878/1‑149 (MQ=255)                                                                                                                 cgcCTGAAGGTTTACCGTGAGTTGTTCTATCGCGCCATCGAAGGCTTGCTGGCTGGCAGCGTCCCGGTCATGCGCCAGGCGTCGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCACTTACCGTTGCCAGACGCCgtt                                    <  6:195481/149‑1 (MQ=255)                                                                                                                   ccTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCgttgt                                  <  2:24432/149‑1 (MQ=255)                                                                                                                      gAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGttt                                <  1:268626/148‑1 (MQ=255)                                                                                                                      gAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGttt                                >  2:268626/1‑148 (MQ=255)                                                                                                                       aaGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGttt                                <  6:89330/147‑1 (MQ=255)                                                                                                                          gTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCg                            >  7:101181/1‑148 (MQ=255)                                                                                                                                cGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGt                                                        <  2:379363/114‑1 (MQ=255)                                                                                                                                cGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGt                                                        >  1:379363/1‑114 (MQ=255)                                                                                                                                 gTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCGAAATTGcc                    <  8:273280/149‑1 (MQ=255)                                                                                                                                  tGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCGAAATTGcc                    >  5:333197/1‑148 (MQ=255)                                                                                                                                  tGAGTTGTTCTAAGGCGCCATCGAAGCCTTGATGGCTGGCAGCTTCACGGTCATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTAACCGTTGCCAGACGCCGTTGATTAACGAAATTGcc                    >  6:139270/1‑148 (MQ=255)                                                                                                                                         ttCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCGAAATTGCCGAGACGt             <  3:274878/148‑1 (MQ=255)                                                                                                                                          tCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCGAAATTGCCGAGACGtt            <  5:282396/148‑1 (MQ=255)                                                                                                                                            tATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATgcgccatagaacaactcacggtaaaccttcaggcgccgggcctcgacgccgggcggcggggcatggcgctgtgggtcgc                                   >  4:290017‑M2/1‑44 (MQ=255)                                                                                                                                            tATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATgcgccatagaacaactcacggtaaaccttcaggcgccgggcctcgacgccgggcggcggggcatggcgctgtgggtcgc                                   <  3:290017‑M2/123‑80 (MQ=255)                                                                                                                                            tATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCGAAATTGCCGAGACg              >  7:112333/1‑144 (MQ=255)                                                                                                                                            tATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCGAAATTGCCGAGACg              <  8:112333/144‑1 (MQ=255)                                                                                                                                            tATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCGAAATTGCCGAGACGTtcgt         >  5:199500/1‑149 (MQ=255)                                                                                                                                              tGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCGAAATTGCCGAGACGTtcg          <  2:181205/146‑1 (MQ=255)                                                                                                                                                gcgcCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATgcgccatagaacaactcacggtaaaccttcaggcgccgggcctcgacgccgggcggcggggcatgtcgctgtgggacgcgcaggtgacgggacaaggcatactgctgcg     <  5:213191‑M2/149‑110 (MQ=255)                                                                                                                                                gcgcCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCGAAATTGCCGAGACGTTCGTCGac     >  6:160335/1‑149 (MQ=255)                                                                                                                                                gcgcCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCGAAATTGCCGAGACGTTCGTCGac     <  3:52997/149‑1 (MQ=255)                                                                                                                                                   ccATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCGAAATTGCCGAGACGTTCGTCGactac  <  1:52340/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     GCTGCCGGAGGGCAAGCAGATGAATGAGACCCTGCGTGCGCAGCAGTATGCCTTGGCCCGTCACCTGCGCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCGAAATTGCCGAGACGTTCGTCGACTAC  >  NC_002947/2744443‑2744737

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.