New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2744589	44 (0.730)	3 (0.050)	3/252	NT	6.3%	coding (128/696 nt)	PP_2399	hypothetical protein
	?	NC_002947	= 2744625	47 (0.820)					coding (164/696 nt)	PP_2399	hypothetical protein

CAGTATGCCTTGGCCCGTCACCTGCGCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCGAAATTGCCGAGACGTTCGTCGACTACTTGCAACATGTGGCGCTGGACACCCCTTGGCAGC  >  NC_002947/2744486‑2744771                                                                                                                                            |                                                                                                                                                   cagTATGCCTTGGCCCGTCACCTGCGCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGc                                                                                                                                           <  2:371527/149‑1 (MQ=255)    tATGCCTTGGCCCGTCACCTGCGCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTAACGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGtt                                                                                                                                        >  4:52997/1‑149 (MQ=255)      tGCCTTGGCCCGTCACCTGCGCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTgg                                                                                                                                      <  3:264705/149‑1 (MQ=255)      tGCCTTGGCCCGTCACCTGCGCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGCTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTgg                                                                                                                                      <  4:142458/149‑1 (MQ=255)        ccTTGGCCCGTCACCTGCGCGACCCCCAGCGCCATGCCCCGCCGCCCGGCGGCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGc                                                                                                                                    <  7:347753/149‑1 (MQ=255)        ccTTGGCCCGTCACCTGCGCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGc                                                                                                                                    <  4:168900/149‑1 (MQ=255)        ccTTGGCCCGTCACCTGCGCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGc                                                                                                                                    <  3:248796/149‑1 (MQ=255)          ttGGCCCGTCACCTGCGCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGc                                                                                                                                    >  1:24432/1‑147 (MQ=255)          ttGGCCCGTCACCTGCGCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGc                                                                                                                                    >  5:33416/1‑147 (MQ=255)            ggCCCGTCACCTGCGCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGag                                                                                                                                 >  6:282396/1‑148 (MQ=255)                    aCCTGCGCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTg                                                                                                                         <  7:350130/148‑1 (MQ=255)                                       ccATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCCGGCGTTGGGCGAGCAGCGCAGGCATGCCCGAGTACGTGAtt                                                                                                     >  2:299480/1‑149 (MQ=255)                                            ccccGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTAc                                                                                                <  6:33416/149‑1 (MQ=255)                                               cgccgcCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGcc                                                                                             <  4:201949/149‑1 (MQ=255)                                                                gCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTTTGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGAc                                                                            >  1:181205/1‑149 (MQ=255)                                                                gCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGagca                                                                                                                               >  3:50490/1‑98 (MQ=255)                                                                gCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGagca                                                                                                                               <  4:50490/98‑1 (MQ=255)                                                                  ccGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGc                                                                          >  2:362069/1‑149 (MQ=255)                                                                     gcgcCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCgt                                                                       >  4:274878/1‑149 (MQ=255)                                                                      cgcCTGAAGGTTTACCGTGAGTTGTTCTATCGCGCCATCGAAGGCTTGCTGGCTGGCAGCGTCCCGGTCATGCGCCAGGCGTCGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCACTTACCGTTGCCAGACGCCgtt                                                                      <  6:195481/149‑1 (MQ=255)                                                                        ccTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCgttgt                                                                    <  2:24432/149‑1 (MQ=255)                                                                           gAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGttt                                                                  >  2:268626/1‑148 (MQ=255)                                                                           gAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGttt                                                                  <  1:268626/148‑1 (MQ=255)                                                                            aaGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGttt                                                                  <  6:89330/147‑1 (MQ=255)                                                                               gTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCg                                                              >  7:101181/1‑148 (MQ=255)                                                                                     cGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGt                                                                                          >  1:379363/1‑114 (MQ=255)                                                                                     cGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGt                                                                                          <  2:379363/114‑1 (MQ=255)                                                                                      gTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCGAAATTGcc                                                      <  8:273280/149‑1 (MQ=255)                                                                                       tGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCGAAATTGcc                                                      >  5:333197/1‑148 (MQ=255)                                                                                       tGAGTTGTTCTAAGGCGCCATCGAAGCCTTGATGGCTGGCAGCTTCACGGTCATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTAACCGTTGCCAGACGCCGTTGATTAACGAAATTGcc                                                      >  6:139270/1‑148 (MQ=255)                                                                                              ttCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCGAAATTGCCGAGACGt                                               <  3:274878/148‑1 (MQ=255)                                                                                               tCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCGAAATTGCCGAGACGtt                                              <  5:282396/148‑1 (MQ=255)                                                                                                 tATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATgcgccatagaacaactcacggtaaaccttcaggcgccgggcctcgacgccgggcggcggggcatggcgctgtgggtcgc                                                                     >  4:290017‑M2/1‑44 (MQ=255)                                                                                                 tATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATgcgccatagaacaactcacggtaaaccttcaggcgccgggcctcgacgccgggcggcggggcatggcgctgtgggtcgc                                                                     <  3:290017‑M2/123‑80 (MQ=255)                                                                                                 tATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCGAAATTGCCGAGACg                                                <  8:112333/144‑1 (MQ=255)                                                                                                 tATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCGAAATTGCCGAGACg                                                >  7:112333/1‑144 (MQ=255)                                                                                                 tATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCGAAATTGCCGAGACGTtcgt                                           >  5:199500/1‑149 (MQ=255)                                                                                                   tGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCGAAATTGCCGAGACGTtcg                                            <  2:181205/146‑1 (MQ=255)                                                                                                     gcgcCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATgcgccatagaacaactcacggtaaaccttcaggcgccgggcctcgacgccgggcggcggggcatgtcgctgtgggacgcgcaggtgacgggacaaggcatactgctgcg                                       <  5:213191‑M2/149‑110 (MQ=255)                                                                                                     gcgcCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCGAAATTGCCGAGACGTTCGTCGac                                       <  3:52997/149‑1 (MQ=255)                                                                                                     gcgcCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCGAAATTGCCGAGACGTTCGTCGac                                       >  6:160335/1‑149 (MQ=255)                                                                                                        ccATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCGAAATTGCCGAGACGTTCGTCGactac                                    <  1:52340/149‑1 (MQ=255)                                                                                                              aaGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCGAAATTGCCGAGACGTTCGTCGACTACTTGCaa                              <  8:101181/149‑1 (MQ=255)                                                                                                                  cTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCGAAATTGCCGAGACGTTCGTCGACTACTTGCAACAtg                          <  1:362069/149‑1 (MQ=255)                                                                                                                   ttGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCGAAATTGCCGAGACGTTCGTCGACTACTTGCAACAtgt                         >  6:239979/1‑149 (MQ=255)                                                                                                                   ttGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTAAGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCGAAATTGCCGAGACGTTCGTCGACTACTTGCAACAtgt                         >  6:241639/1‑149 (MQ=255)                                                                                                                     cctggctggCAGCTTCCCGGTGATGCGCCAGGAGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCAAGTTACCGTTGCCAGACGCAGTTGTTTACCGAAATTGCCGAGACGTTCGTCGACTACTTGCAACATGTgg                       >  7:242681/2‑149 (MQ=255)                                                                                                                      ctggctggCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCGAAATTGCCGAGACGTTCGTCGACTACTTGCAACATGTgg                       <  7:205598/148‑1 (MQ=255)                                                                                                                         gctggcAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCGAAATTGCCGAGACGTTCGTCGACTACTTGCAACATGTGGCGCt                   >  8:21084/1‑149 (MQ=255)                                                                                                                                     ccGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCGAAATTGCCGAGACGTTCGTCTACTACTTGCAACATGTGGCGCTGGACACCCCTTg       >  4:33143/1‑149 (MQ=255)                                                                                                                                     ccGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCGAAATTGCCGAGACGTTCGTCGACTACTTGCAACATGTGGCGCTGGACACCCCTTg       >  4:110437/1‑149 (MQ=255)                                                                                                                                           aTGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCGAAATTGCCGAGACGTTCGTCGACTACTTGCAACATGTGGCGCTGGACACCCCTTGGCagc  <  3:154866/148‑1 (MQ=255)                                                                                                                                            |                                                                                                                                                   CAGTATGCCTTGGCCCGTCACCTGCGCGACCCACAGCGCCATGCCCCGCCGCCCGGCGTCGAGGCCCGGCGCCTGAAGGTTTACCGTGAGTTGTTCTATGGCGCCATCGAAGGCTTGCTGGCTGGCAGCTTCCCGGTGATGCGCCAGGCGTTGGGCGAGCAGCGCTGGCATGCCCGAGTACGTGATTTCTACGCCAGTTACCGTTGCCAGACGCCGTTGTTTACCGAAATTGCCGAGACGTTCGTCGACTACTTGCAACATGTGGCGCTGGACACCCCTTGGCAGC  >  NC_002947/2744486‑2744771

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.