New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3224865 =	47 (0.780)	3 (0.050)	3/250	NT	7.2%	coding (554/915 nt)	mexT	transcriptional regulator MexT
	?	NC_002947	3224942 =	33 (0.580)					coding (477/915 nt)	mexT	transcriptional regulator MexT

CGACGGGTCAACTACTTGCTGATGCCAACCCTGCTGGCCTCGGGCGAGATTTCGGTGGGGGTCAGCTACACCAGCGAACTGCCGGCCAACGCCAAGCGCAAGGTGCTGCGCCGCAGCATGCCGAAACTGCTGCGCGCCGACAGCGTACCCGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3225019‑3224865 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcagTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCATCAGCAAGTAGTTGA  >  NC_002947/3224942‑3225012                                                                                                                                                                                                                                    CGACGGGTCAACTACTTGCTGATGCCAACCCTGCTGGCCTCGGGCGAGATTTCGGTGGGGGTCAGCTACACCAGCGAACTGCCGGCCAACGCCAAGCGCAAGGTGCTGCGCCGCAGCATGCCGAAACTGCTGCGCGCCGACAGCGTACC                                                                               <  6:111367/149‑1    CGGGTCAACTACTTGCTGATGCCAACCCTGCTGGCCTCGGGCGAGATTTCGGTGGGGGTCAGCTACACCAGCGAACTGCCGGCCAACGCCAAGCGCAAGGTGCTGCGCCGCAGCATGCCGAAACTGCTGCGCGCCGACAGCGTACCCGG                                                                            <  2:80957/149‑1      GGTCAACTACTTGCTGATGCCAACCCTGCTGGCCTCGGGCGAGATTTCGGTGGGGGTCAGCTACACCAGCGAACTGCCGGCCAACGCCAAGCGCAAGGTGCTGCGCCGCAGCATGCCGAAACTGCTGCGCGCCGACAGCGTACCCGGCA                                                                          <  7:316619/149‑1                                                                          GCGAACTGCCGGCCAACGCCAAGCGCAAGGTGCTGCGCCGCAGCATGCCGAAACTGCTGCGCGCCGACAGCGTACCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCATCAGCAAGTAG      >  3:77947/1‑149                                                                            GAACTGCCGGCCAACGCCAAGCGCAAGGTGCTGCGCCGCAGCATGCCGAAACTGCTGCGCGCCGACAGCGTACCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCATCAGCAAGTAGTT    >  8:343196/1‑149                                                                              ACTGCCGGCCAACGCCAAGCGCAAGGTGCTGCGCCGCAGCATGCCGAAACTGCTGCGCGCCGACAGCGTACCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCATCAGCAAGTAGTTGA  <  4:77947/149‑1                                                                                                                                                                                                                                    CGACGGGTCAACTACTTGCTGATGCCAACCCTGCTGGCCTCGGGCGAGATTTCGGTGGGGGTCAGCTACACCAGCGAACTGCCGGCCAACGCCAAGCGCAAGGTGCTGCGCCGCAGCATGCCGAAACTGCTGCGCGCCGACAGCGTACCCGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3225019‑3224865 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcagTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCATCAGCAAGTAGTTGA  >  NC_002947/3224942‑3225012

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.