New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3224865 =	47 (0.780)	3 (0.050)	3/250	NT	7.2%	coding (554/915 nt)	mexT	transcriptional regulator MexT
	?	NC_002947	3224942 =	33 (0.580)					coding (477/915 nt)	mexT	transcriptional regulator MexT

TCCCCAGCCCGTTGAACTGCGGTACCGCCAGCACCACGTGGCGCTTGCGGCCGATGTCTTCCAGGGCTTCGTCGATGAACCCGGACAAGTCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCATCAGCAAGTA  >  NC_002947/3224719‑3225007                                                                                                                                                   |                                                                                                                                               tCCCCAGCCCGTTGAACTGCGGTACCGCCAGCACCACGTGGCGCTTGCGGCCGATGTCTTCCAGGGCTTCGTCGATGAACCCGGACAAGTCCCCGGCAAACGACAACAGCGCATGGGGCCGGGCGCTGATGTCATCCAGGGTGAtgctg                                                                                                                                              >  6:282617/1‑149 (MQ=255)  ccccAGCCCGTTGAACTGCGGTACCGCCAGCACCACGTGGCGCTTGCGACCGATGTCTTCCAGGGCTTCGTCGATGAACCCGGACAAGTCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGAtgctgc                                                                                                                                             >  1:279340/1‑149 (MQ=255)   cccAGCCCGTTGAACTGCGGTACCGCCAGCACCACGTGGCGCTTGCGGCCGATGTCTTCCAGGGCTTCGTCGATGAACCCGGACAAGTCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGcc                                                                                                                                            >  5:160725/1‑149 (MQ=255)    ccAGCCCGTTGAACTGCGGTACCGCCAGCACCACGTGGCGCTTGCGGCCGATGTCTTCCAGGGCTTCGTCGATGAACCCGGACAAGTCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCg                                                                                                                                           >  3:128207/1‑149 (MQ=255)          cGTTGAACTGCGGTACCGCCAGCACCACGTGGCGCTTGCGGCCGATGTCTTCCAGGGCTTCGTCGATGAACCCGGACAAGTCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACg                                                                                                                                     >  3:8583/1‑149 (MQ=255)          cGTTGAACTGCGGTACCGCCAGCACCACGTGGCGCTTGCGGCCGATGTCTTCCAGGGCTTCGTCGATGAACCCGGACAAGTCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACg                                                                                                                                     <  2:279340/149‑1 (MQ=255)             tGAACTGCGGTACCGCCAGCACCACGTGGCGCTTGCGGCCGATGTCTTCCAGGCCTTCGTCGATGAACCCGGACAAGTCCCCGGCAAACGACACCAGCGCATCGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTg                                                                                                                                  >  2:355073/1‑149 (MQ=255)                aCTGCGGTACCGCCAGCACCACGTGGCGCTTGCGGCCGATGTCTTCCAGGGCTTCGTCGATGAACCCGGACAAGTCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTc                                                                                                                                <  6:164170/148‑1 (MQ=255)                aCTGCGGTACCGCCAGCACCACGTGGCGCTTGCGGCCGATGTCTTCCAGGGCTTCGTCGATGAACCCGGACAAGTCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCg                                                                                                                               <  4:157516/149‑1 (MQ=255)                 cTGCGGTACCGCCAGCACCACGTGGCGCTTGCGGCCGATGTCTTCCAGGGCTTCGTCGATGAACCCGGACAAGTCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCgg                                                                                                                              <  7:347933/149‑1 (MQ=255)                         ccGCAAGCGCCACGTGGTGCTGGCGGCCGATGTCTTCCAGGGCTTCGTCGATGAACCCGGACAAGTCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCgcag                                                                                                                       >  6:44005/1‑148 (MQ=255)                           gcaaGCGCCACGTGGTGCTGGCGGCCGATGTCTTCCAGGGCTTCGTCGATGAACCCGGACAAGTCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGcagcag                                                                                                                    >  4:113463/4‑149 (MQ=255)                             cAGCACCACGTGGCGCTTGCGGCCGATGTCTTCCAGGGCTTCGTCGATGAACCCGGACAAGTCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGt                                                                                                                                 <  2:296008/134‑1 (MQ=255)                             cAGCACCACGTGGCGCTTGCGGCCGATGTCTTCCAGGGCTTCGTCGATGAACCCGGACAAGTCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGt                                                                                                                                 >  1:296008/1‑134 (MQ=255)                                 accacGTGGCGCTTGCGGCCGATGTCTTCCAGGGCTTCGTCGATGAACCCGGACAAGTCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCgg                                                                                                              <  6:96939/149‑1 (MQ=255)                                    acGTGGCGCTTGCGGCCGATGTCTTCCAGGGCTTCGTCGATGAACCCGGACAAGTCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCAt                                                                                                           <  3:207906/149‑1 (MQ=255)                                     cGTGGCGCTTGCGGCCGATGTCTTCCAGGGCTTCGTCGATGAACCCGGACAAGTCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCAtg                                                                                                          <  6:160725/149‑1 (MQ=255)                                                cGGCCGATGTCTTCCAGGGCTTCGTCGATGAACCCGGACAAGTCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCgcag                                                                                               <  8:213023/149‑1 (MQ=255)                                                           ttCCAGGGCTTCGTCGATGAACCCGGACAAGTCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCt                                                                                    >  4:137475/1‑149 (MQ=255)                                                              cAGGGCTTCGTCGATGAACCCGGACAAGTCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTg                                                                                  <  7:230356/148‑1 (MQ=255)                                                                   cTTCGTCGATGAACCCGGACAAGTCCGCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTg                                                                            <  5:282617/149‑1 (MQ=255)                                                                   cTTCGTCGATGAACCCGGACAAGTCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGttc                                                                            <  4:8583/149‑2 (MQ=255)                                                                   cTTCGTCGATGAACCCGGACAAGTCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTg                                                                            <  3:113463/149‑1 (MQ=255)                                                                            tcaactacttgctgatgccaaccctgctggcctcgggcgagatttcggtgggggtcagctacaccagcgaaCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGt                                                                   <  4:77947‑M1/78‑1 (MQ=255)                                                                             gAACCCGGACAAGTCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGtt                                                                  >  2:271023/1‑149 (MQ=255)                                                                              aactacttgctgatgccaaccctgctggcctcgggcgagatttcggtgggggtcagctacaccagcgaaCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTc                                                                 >  8:343196‑M1/70‑149 (MQ=255)                                                                                ctacttgctgatgccaaccctgctggcctcgggcgagatttcggtgggggtcagctacaccagcgaaCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGc                                                               >  3:77947‑M1/68‑149 (MQ=255)                                                                                cccGGACAAGTCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGc                                                               <  1:2682/149‑1 (MQ=255)                                                                                cccGGACAAGTCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGc                                                               >  5:368151/1‑149 (MQ=255)                                                                                  cGGACAAGTCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTg                                                             <  5:44005/149‑1 (MQ=255)                                                                                       aaGTCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTa                                                        <  5:89263/149‑1 (MQ=255)                                                                                          tCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCt                                                     >  4:163238/1‑149 (MQ=255)                                                                                          tCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCt                                                     >  2:38754/1‑149 (MQ=255)                                                                                             ccGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGAc                                                  >  1:284775/1‑149 (MQ=255)                                                                                               ggCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGAccc                                                >  7:244086/1‑149 (MQ=255)                                                                                                       acacCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGaa                                        <  5:178021/149‑1 (MQ=255)                                                                                                             gcgcATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCg                                  >  2:136976/1‑149 (MQ=255)                                                                                                              cgcATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGc                                 <  1:334061/149‑1 (MQ=255)                                                                                                                  tGGGGCCTGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGa                             <  2:316288/149‑1 (MQ=255)                                                                                                                  tGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGa                             <  3:137475/149‑1 (MQ=255)                                                                                                                    gggCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGTGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGGAGCACCTTGCTCTTGTCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAgg                           <  1:355073/149‑1 (MQ=255)                                                                                                                    gggCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAg                            <  1:136976/148‑1 (MQ=255)                                                                                                                      gCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGcc                         <  4:128207/149‑1 (MQ=255)                                                                                                                          ggCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCcag                       >  8:220467/1‑147 (MQ=255)                                                                                                                               aGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGtt                >  8:150264/1‑149 (MQ=255)                                                                                                                                 aaGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTgg              <  5:327939/149‑1 (MQ=255)                                                                                                                                  aGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGc             <  6:215839/149‑1 (MQ=255)                                                                                                                                    tCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCAt           <  2:300206/149‑1 (MQ=255)                                                                                                                                       tCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCATCAg        <  7:220467/149‑1 (MQ=255)                                                                                                                                         cAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCATCAGc       <  2:284775/148‑1 (MQ=255)                                                                                                                                          aGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCATCAGCaa     <  1:38754/149‑1 (MQ=255)                                                                                                                                          aGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCATCAGCaa     <  3:163238/149‑1 (MQ=255)                                                                                                                                             gTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCATCAGCAagta  <  8:244086/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                               TCCCCAGCCCGTTGAACTGCGGTACCGCCAGCACCACGTGGCGCTTGCGGCCGATGTCTTCCAGGGCTTCGTCGATGAACCCGGACAAGTCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCATCAGCAAGTA  >  NC_002947/3224719‑3225007

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.