New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3224865 =	47 (0.780)	3 (0.050)	3/250	NT	7.2%	coding (554/915 nt)	mexT	transcriptional regulator MexT
	?	NC_002947	3224942 =	33 (0.580)					coding (477/915 nt)	mexT	transcriptional regulator MexT

TGAACCCGGACAAGTCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCATCAGCAAGTAGTTGACCCGTCGCACCACCAGCACGATACCGGGCGCCTCGGCGCGAATGCGCTTGAGCAGTTGCGGCAGCAAGGC  >  NC_002947/3224794‑3225082                                                                                                                                                     |                                                                                                                                             tcaactacttgctgatgccaaccctgctggcctcgggcgagatttcggtgggggtcagctacaccagcgaaCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGt                                                                                                                                              <  4:77947‑M1/78‑1 (MQ=255)  gAACCCGGACAAGTCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGtt                                                                                                                                             >  2:271023/1‑149 (MQ=255)   aactacttgctgatgccaaccctgctggcctcgggcgagatttcggtgggggtcagctacaccagcgaaCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTc                                                                                                                                            >  8:343196‑M1/70‑149 (MQ=255)     ctacttgctgatgccaaccctgctggcctcgggcgagatttcggtgggggtcagctacaccagcgaaCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGc                                                                                                                                          >  3:77947‑M1/68‑149 (MQ=255)     cccGGACAAGTCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGc                                                                                                                                          <  1:2682/149‑1 (MQ=255)     cccGGACAAGTCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGc                                                                                                                                          >  5:368151/1‑149 (MQ=255)       cGGACAAGTCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTg                                                                                                                                        <  5:44005/149‑1 (MQ=255)            aaGTCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTa                                                                                                                                   <  5:89263/149‑1 (MQ=255)               tCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCt                                                                                                                                >  4:163238/1‑149 (MQ=255)               tCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCt                                                                                                                                >  2:38754/1‑149 (MQ=255)                  ccGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGAc                                                                                                                             >  1:284775/1‑149 (MQ=255)                    ggCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGAccc                                                                                                                           >  7:244086/1‑149 (MQ=255)                            acacCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGaa                                                                                                                   <  5:178021/149‑1 (MQ=255)                                  gcgcATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCg                                                                                                             >  2:136976/1‑149 (MQ=255)                                   cgcATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGc                                                                                                            <  1:334061/149‑1 (MQ=255)                                       tGGGGCCTGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGa                                                                                                        <  2:316288/149‑1 (MQ=255)                                       tGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGa                                                                                                        <  3:137475/149‑1 (MQ=255)                                         gggCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGTGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGGAGCACCTTGCTCTTGTCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAgg                                                                                                      <  1:355073/149‑1 (MQ=255)                                         gggCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAg                                                                                                       <  1:136976/148‑1 (MQ=255)                                           gCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGcc                                                                                                    <  4:128207/149‑1 (MQ=255)                                               ggCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCcag                                                                                                  >  8:220467/1‑147 (MQ=255)                                                    aGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGtt                                                                                           >  8:150264/1‑149 (MQ=255)                                                      aaGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTgg                                                                                         <  5:327939/149‑1 (MQ=255)                                                       aGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGc                                                                                        <  6:215839/149‑1 (MQ=255)                                                         tCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCAt                                                                                      <  2:300206/149‑1 (MQ=255)                                                            tCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCATCAg                                                                                   <  7:220467/149‑1 (MQ=255)                                                              cAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCATCAGc                                                                                  <  2:284775/148‑1 (MQ=255)                                                               aGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCATCAGCaa                                                                                <  3:163238/149‑1 (MQ=255)                                                               aGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCATCAGCaa                                                                                <  1:38754/149‑1 (MQ=255)                                                                  gTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCATCAGCAagta                                                                             <  8:244086/149‑1 (MQ=255)                                                                   gcgaactgccggccaacgccaagcgcaaggtgctgcgccgcagcatgccgaaactgctgcgcgccgacagcgtacccggcagTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCATCAGCAagtag                                                                            >  3:77947‑M2/83‑149 (MQ=255)                                                                     gaactgccggccaacgccaagcgcaaggtgctgcgccgcagcatgccgaaactgctgcgcgccgacagcgtacccggcagTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCATCAGCAAGTAGtt                                                                          >  8:343196‑M2/81‑149 (MQ=255)                                                                       actgccggccaacgccaagcgcaaggtgctgcgccgcagcatgccgaaactgctgcgcgccgacagcgtacccggcagTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCATCAGCAAGTAGTTGa                                                                        <  4:77947‑M2/71‑1 (MQ=255)                                                                         TGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCATCAGCAAGTAGTTGAcc                                                                      <  7:316619‑M1/149‑1 (MQ=255)                                                                           CCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCATCAGCAAGTAGTTGACCCg                                                                    <  2:80957‑M1/149‑1 (MQ=255)                                                                              GGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCATCAGCAAGTAGTTGACCCGTCg                                                                 <  6:111367‑M1/149‑1 (MQ=255)                                                                                                agcagTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCATCAGCAAGTAGTTGACCCGTCGCACCACCAGCACGATAcc                                               >  6:326156/1‑149 (MQ=255)                                                                                                    gTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCATCAGCAAGTAGTTGACCCGTCGCACCACCAGCACGATACCGGgc                                           <  1:271023/149‑1 (MQ=255)                                                                                                           cATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCATCAGCAAGTAGTTGACCCGTCGCACCACCAGCACGATACCGGGCGCCTCgg                                    <  5:111367/149‑1 (MQ=255)                                                                                                                         gcaCCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCATCAGCAAGTAGTTGACCCGTCGCACCACCAGCACGATACCGGGCGCCTCGGCGCGAATGCGCTTg                      <  7:218573/149‑1 (MQ=255)                                                                                                                           aCCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCAc                                                                                                                       <  6:88823/50‑1 (MQ=255)                                                                                                                           aCCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCAc                                                                                                                       >  5:88823/1‑50 (MQ=255)                                                                                                                             cTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCATCAGCAAGTAGTTGACCCGTCGCACCACCAGCACGATACCGGGCGCCTCGGCGCGAATGCGCTTGAg                    >  2:236210/1‑147 (MQ=255)                                                                                                                                   cTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCATCAGCAAGTAGTTGACCCGTCGCACCACCAGCACGATACCGGGCGCCTCGGCGCGAATGCGCTTGAGCAGTTGCg            <  7:150264/149‑1 (MQ=255)                                                                                                                                   cTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCATCAGCAAGTAGTTGACCCGTCGCACCACCAGCACGATACCGGGCGCCTCGGCGCGAATGCGCTTGAGCAGTTGCg            >  3:31512/1‑149 (MQ=255)                                                                                                                                             gCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCATCAGCAAGTAGTTGACCCGTCGCACCACCAGCACGATACCGGGCGCCTCGGCGCGAATGCGCTTGAGCAGTTGCGGCAGCAAGGc  >  6:212577/1‑149 (MQ=255)                                                                                                                                             gCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCATCAGCAAGTAGTTGACCCGTCGCACCACCAGCACGATACCGGGCGCCTCGGCGCGAATGCGCTTGAGCAGTTGCGGCAGCAAGGc  >  8:338701/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                             TGAACCCGGACAAGTCCCCGGCAAACGACACCAGCGCATGGGGCCGGGCGCAGAAGTCATCCAGGGTGATGCTGCCGGGTACGCTGTCGGCGCGCAGCAGTTTCGGCATGCTGCGGCGCAGCACCTTGCGCTTGGCGTTGGCCGGCAGTTCGCTGGTGTAGCTGACCCCCACCGAAATCTCGCCCGAGGCCAGCAGGGTTGGCATCAGCAAGTAGTTGACCCGTCGCACCACCAGCACGATACCGGGCGCCTCGGCGCGAATGCGCTTGAGCAGTTGCGGCAGCAAGGC  >  NC_002947/3224794‑3225082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.