New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3320238	37 (0.610)	3 (0.050)	3/246	NT	7.4%	intergenic (‑93/‑28)	PP_2919/ybgL	LysR family transcriptional regulator/nitrogen‑containing compound degradation protein
	?	NC_002947	= 3320264	41 (0.730)					intergenic (‑119/‑2)	PP_2919/ybgL	LysR family transcriptional regulator/nitrogen‑containing compound degradation protein

GCGAGATCTGGCCGATTTCAGCGGTGGCAACGAAGTAGCGGACCTGGCGCAGGGTGAGTGACACGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3320082‑3320238 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttgcatgACCGCGTCTCCTGGCACTTGTGACTGCATGCAAGCCACGTTAGATTCTCCGCACCCCCTTGGGAAGATCTATAAACAGATGGGGTACCTTCTGAAAAACAGATACCCCGGGAGCCTACCGTGTCACTCACCCTGCGCCAGGTCCGCTA  <  NC_002947/3320264‑3320117                                                                                                                                                                                                                                                                                                                   GCGAGATCTGGCCGATTTCAGCGGTGGCAACGAAGTAGCGGACCTGGCGCAGGGTGAGTGACACGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGGTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGG                                                                                                                                                              >  4:265156/1‑149  CGAGATCTGGCCGATTTCAGCGGTGGCAACGAAGTAGCGGACCTGGCGCAGGGTGAGTGACACGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGG                                                                                                                                                              <  4:110976/148‑1         TGGCCGATTTCAGCGGTGGCAACGAAGTAGCGGACCTGGCGCAGGGTGAGTGACACGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGC                                                                                                                                                         <  8:269024/146‑1           GCCGATTTCAGCGGTGGCAACGAAGTAGCGGACCTGGCGCAGGGTGAGTGACACGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATG                                                                                                                                                      <  2:134544/147‑1           GCCGATTTCAGCGGTGGCAACGAAGTAGCGGACCTGGCGCAGGGTGAGTGACACGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCAT                                                                                                                                                       <  2:25512/146‑1           GCCGATTTCAGCGGTGGCAACGAAGTAGCGGACCTGGCGCAGGGTGAGTGACACGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCA                                                                                                                                                        <  4:223272/145‑1                                       CGGACCTGGCTCAGGGTGAGTGACACGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGACCGCGTCTCCTGGCACTTGTGACTGCATG                                                                                                                        <  1:264442/149‑1                                                                                                                    ATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGACCGCGTCTCCTGGCACTTGTGACTGCATGCAA                                                                                                                     <  3:27464/75‑1                                                                                                                    ATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGACCGCGTCTCCTGGCACTTGTGACTGCATGCAA                                                                                                                     >  4:27464/1‑75                                                                                                                                                       TTGCATGACCGCGTCTCCTGGCACTTGTGACTGCATGCAAGCCACGTTAGATTCTCCGCACCCCCTTGGGAAGATCTATAAACAGATGGGGTACCTTCTGAAAAACAGATACCCCGGGAGCCTACCGTGTCACTCACCCTGCGCCAGGT        >  7:70634/1‑149                                                                                                                                                       TTGCATGACCGCGTCTCCTGGCACTTGTGACTGCATGCAAGCCACGTTAGATTCTCCGCACCCCCTTGGGAAGATCTATAAACAGATGGGGTACCTTCTGAAAAACAGATACCCCGGGAGCCTACCGTGTCACTCACCCTGCGCC            >  7:84458/1‑145                                                                                                                                                       TTGCATGACCGCGTCTCCTGGCACTTGTGACTGCATGCAAGCCACGTTAGATTCTCCGCACCCCCTTGGGAAGATCTATAAACAGATGGGGTACCTTCTGAAAAACAGATACCCCGGGAGCCTACCGTGTCACTCACCCTGCGCC            <  8:84458/145‑1                                                                                                                                                         GCATGACCGCGTCTCCTGGCACTTGTGACTGCATGCAAGCCACGTTAGATTCTCCGCACCCCCTTGGGAAGATCTATAAACAGATGGGGTACCTTCTGAAAAACAGATACCCCGGGAGCCTACCGTGTCACTCACCCTGCGCCAGGT        <  1:198660/147‑1                                                                                                                                                          CATGACCGCGTCTCCTGGCACTTGTGACTGCATGCAAGCCACGTTAGATTCTCCGCACCCCCTTGGGAAGATCTATAAACAGATGGGGTACCTTCTGAAAAACAGATACCCCGGGAGCCTACCGTGTCACTCACCCTGCGCCAGGTCCG     >  5:75459/1‑149                                                                                                                                                             GACCGCGTCTCCTGGCACTTGTGACTGCATGCAAGCCACGTTAGATTCTCCGCACCCCCTTGGGAAGATCTATAAACAGATGGGGTACCTTCTGAAAAACAGATACCCCGGGAGCCTACCGTGTCACTCACCCTGCGCCAGGTCCGCTA  >  2:110854/1‑149                                                                                                                                                                                                                                                                                                                   GCGAGATCTGGCCGATTTCAGCGGTGGCAACGAAGTAGCGGACCTGGCGCAGGGTGAGTGACACGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3320082‑3320238 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttgcatgACCGCGTCTCCTGGCACTTGTGACTGCATGCAAGCCACGTTAGATTCTCCGCACCCCCTTGGGAAGATCTATAAACAGATGGGGTACCTTCTGAAAAACAGATACCCCGGGAGCCTACCGTGTCACTCACCCTGCGCCAGGTCCGCTA  <  NC_002947/3320264‑3320117

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.