New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3320238	37 (0.610)	3 (0.050)	3/246	NT	7.4%	intergenic (‑93/‑28)	PP_2919/ybgL	LysR family transcriptional regulator/nitrogen‑containing compound degradation protein
	?	NC_002947	= 3320264	41 (0.730)					intergenic (‑119/‑2)	PP_2919/ybgL	LysR family transcriptional regulator/nitrogen‑containing compound degradation protein

GCCGATTTCAGCGGTGGCAACGAAGTAGCGGACCTGGCGCAGGGTGAGTGACACGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACTGGTTTCC  >  NC_002947/3320092‑3320386                                                                                                                                                   |                                                                                                                                                     gCCGATTTCAGCGGTGGCAACGAAGTAGCGGACCTGGCGCAGGGTGAGTGACACGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATG                                                                                                                                                      <  2:134544‑M1/147‑1 (MQ=255)  ccGATTTCAGCGGTGGCAACGAAGTAGCGGACCTGGCGCAGGGTGAGTGACACGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAg                                                                                                                                                   <  6:305247/149‑1 (MQ=255)               tGGCAACGAAGTAGCGGACCTGGCGCAGGGTGAGTGACACGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAg                                                                                                                                      <  7:192728/149‑1 (MQ=255)                   aaCGAAGTAGCGGACCTGGCGCAGGGTGAGTGACACGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTcac                                                                                                                                               >  5:125794/1‑136 (MQ=255)                   aaCGAAGTAGCGGACCTGGCGCAGGGTGAGTGACACGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTcac                                                                                                                                               <  6:125794/136‑1 (MQ=255)                          tAGCGGACCTGGCGCAGGGTGAGTGACACGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTc                                                                                                                           >  2:110854‑M2/1‑148 (MQ=255)                             cGGACCTGGCTCAGGGTGAGTGACACGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGaccgcgtctcctggcacttgtgactgcatg                                                                                                                        <  1:264442‑M1/149‑31 (MQ=255)                             cGGACCTGGCGCAGGGTGAGTGACACGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTcatg                                                                                                                        >  5:75459‑M2/1‑145 (MQ=255)                                aCCTGGCGCAGGGTGAGTGACACGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTcatgcaa                                                                                                                     >  7:70634‑M2/1‑142 (MQ=255)                                aCCTGGCGCAGGGTGAGTGACACGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTcatgc                                                                                                                       <  1:198660‑M2/147‑6 (MQ=255)                                    ggCGCAGGGTGAGTGACACGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTcatgcaa                                                                                                                     <  8:84458‑M2/145‑8 (MQ=255)                                    ggCGCAGGGTGAGTGACACGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTcatgcaa                                                                                                                     >  7:84458‑M2/1‑138 (MQ=255)                                                    cacGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGa                                                                                                 <  7:45831/149‑1 (MQ=255)                                                             cTCCCTGGGTATCTGTTTTTCAGAAGCTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGa                                                                                        <  8:31625/149‑1 (MQ=255)                                                               cccGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCCCAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAGCTCGGACATGGGTGCgg                                                                                      >  4:233880/1‑149 (MQ=255)                                                                ccGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAggg                                                                                     >  6:45135/1‑149 (MQ=255)                                                                ccGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAggg                                                                                     <  5:256720/149‑1 (MQ=255)                                                                    ggTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCttt                                                                                 <  2:161583/149‑1 (MQ=255)                                                                     gTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTATCAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTg                                                                                <  1:303228/149‑1 (MQ=255)                                                                          tGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCg                                                                           >  1:40976/1‑149 (MQ=255)                                                                            tttttCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTg                                                                         <  4:318883/149‑1 (MQ=255)                                                                                      ggTACCCCATCTGTTTATAGATATTCCCAATGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCAAAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGGGAGGGCTTTGGCCCGTGGACCATTGGc                                                               <  5:184582/149‑1 (MQ=255)                                                                                                      ataGATCTTCCCTAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGAt                                                                                                            <  8:146589/88‑1 (MQ=255)                                                                                                      ataGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCAGGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAAt                                                >  4:305130/1‑148 (MQ=255)                                                                                                       taGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAAt                                                >  8:24076/1‑147 (MQ=255)                                                                                                       taGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAAt                                                >  1:139421/1‑147 (MQ=255)                                                                                                         gATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGc                                            <  5:45135/149‑1 (MQ=255)                                                                                                          aTCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGaccgcgtctcctggcacttgtgactgcatgcaa                                                                                                                     >  4:27464‑M1/1‑42 (MQ=255)                                                                                                          aTCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGaccgcgtctcctggcacttgtgactgcatgcaa                                                                                                                     <  3:27464‑M1/75‑34 (MQ=255)                                                                                                           tCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGa                                                    <  7:36420/139‑1 (MQ=255)                                                                                                           tCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGa                                                    >  8:36420/1‑139 (MQ=255)                                                                                                            cTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCg                                                        <  2:339177/134‑1 (MQ=255)                                                                                                            cTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCg                                                        >  1:339177/1‑134 (MQ=255)                                                                                                             ttCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGAt                                        >  6:181282/1‑149 (MQ=255)                                                                                                             ttCCCAAGGGGGTGCGGAGAATCTAAAGAGCCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCATCTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAAAGAGCTTAt                                        >  1:341519/1‑149 (MQ=255)                                                                                                               cccAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATgg                                      >  1:4359/1‑149 (MQ=255)                                                                                                                ccAAGGGGGTGCGGAGAATCTTACGTGGCTTGCATGCAGTCACAAGTGCCTGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATgg                                      <  2:341519/148‑1 (MQ=255)                                                                                                                ccAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATgg                                      <  4:169978/148‑1 (MQ=255)                                                                                                                ccAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATgg                                      <  2:198660/148‑1 (MQ=255)                                                                                                                ccAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGAAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACACGGACATGGGTGAGGGCTTTTGCCCGTGTACCATTGGAGATGGCGTCTACAATAAGCTGATgtg                                     >  7:328193/1‑147 (MQ=255)                                                                                                                 cAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGt                                    <  3:265156/149‑1 (MQ=255)                                                                                                                 cAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGt                                    >  3:369878/1‑149 (MQ=255)                                                                                                                   aGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCAATGGCGATGGCGGCGACAATGAGCTGATGGGtt                                   >  5:336398/1‑148 (MQ=255)                                                                                                                         tGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATcag                            <  2:40976/149‑1 (MQ=255)                                                                                                                             gagaATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTGTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCagcagc                        <  1:357680/149‑1 (MQ=255)                                                                                                                                      aCGTGACTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATc               >  5:48667/1‑149 (MQ=255)                                                                                                                                            cTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACt         <  2:139421/149‑1 (MQ=255)                                                                                                                                             ttGCATGaccgcgtctcctggcacttgtgactgcatgcaagccacgttagattctccgcacccccttgggaagatctataaacagatggggtaccttctgaaaaacagataccccgggagcctaccgtgtcactcaccctgcgccaggt        >  7:70634‑M1/1‑7 (MQ=255)                                                                                                                                             ttGCATGaccgcgtctcctggcacttgtgactgcatgcaagccacgttagattctccgcacccccttgggaagatctataaacagatggggtaccttctgaaaaacagataccccgggagcctaccgtgtcactcaccctgcgcc            <  8:84458‑M1/145‑139 (MQ=255)                                                                                                                                             ttGCATGaccgcgtctcctggcacttgtgactgcatgcaagccacgttagattctccgcacccccttgggaagatctataaacagatggggtaccttctgaaaaacagataccccgggagcctaccgtgtcactcaccctgcgcc            >  7:84458‑M1/1‑7 (MQ=255)                                                                                                                                             ttGCATGCAGTCACAAGTGCCAGGAGACGCGGTcatgcaagccacgttagattctccgcacccccttgggaagat                                                                                  <  3:27464‑M2/75‑43 (MQ=255)                                                                                                                                             ttGCATGCAGTCACAAGTGCCAGGAGACGCGGTcatgcaagccacgttagattctccgcacccccttgggaagat                                                                                  >  4:27464‑M2/1‑33 (MQ=255)                                                                                                                                             ttGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACTg        >  6:263060/1‑149 (MQ=255)                                                                                                                                               gCATGaccgcgtctcctggcacttgtgactgcatgcaagccacgttagattctccgcacccccttgggaagatctataaacagatggggtaccttctgaaaaacagataccccgggagcctaccgtgtcactcaccctgcgccaggt        <  1:198660‑M1/147‑143 (MQ=255)                                                                                                                                                catgcaGTCACAAGTGCCAGGAGACGCGGTcatgcaagccacgttagattctccgcacccccttgggaagatctataaacagatggggtaccttctgaaaaacagataccccgggagcctaccgtgtcactcaccctgagccaggtccg     <  1:264442‑M2/149‑120 (MQ=255)                                                                                                                                                cATGaccgcgtctcctggcacttgtgactgcatgcaagccacgttagattctccgcacccccttgggaagatctataaacagatggggtaccttctgaaaaacagataccccgggagcctaccgtgtcactcaccctgcgccaggtccg     >  5:75459‑M1/1‑4 (MQ=255)                                                                                                                                                   gaccgcgtctcctggcacttgtgactgcatgcaagccacgttagattctccgcacccccttgggaagatctataaacagatggggtaccttctgaaaaacagataccccgggagcctaccgtgtcactcaccctgcgccaggtccgcta  >  2:110854‑M1/1‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     GCCGATTTCAGCGGTGGCAACGAAGTAGCGGACCTGGCGCAGGGTGAGTGACACGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACTGGTTTCC  >  NC_002947/3320092‑3320386

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.