New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3320238	37 (0.610)	3 (0.050)	3/246	NT	7.4%	intergenic (‑93/‑28)	PP_2919/ybgL	LysR family transcriptional regulator/nitrogen‑containing compound degradation protein
	?	NC_002947	= 3320264	41 (0.730)					intergenic (‑119/‑2)	PP_2919/ybgL	LysR family transcriptional regulator/nitrogen‑containing compound degradation protein

TAGCGGACCTGGCGCAGGGTGAGTGACACGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACTGGTTTCCATGCCGGCGACCCCGGCAC  >  NC_002947/3320117‑3320405                                                                                                                                                    |                                                                                                                                              tAGCGGACCTGGCGCAGGGTGAGTGACACGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTc                                                                                                                                              >  2:110854‑M2/1‑148 (MQ=255)    cGGACCTGGCGCAGGGTGAGTGACACGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTcatg                                                                                                                                           >  5:75459‑M2/1‑145 (MQ=255)       aCCTGGCGCAGGGTGAGTGACACGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTcatgcaa                                                                                                                                        >  7:70634‑M2/1‑142 (MQ=255)       aCCTGGCGCAGGGTGAGTGACACGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTcatgc                                                                                                                                          <  1:198660‑M2/147‑6 (MQ=255)           ggCGCAGGGTGAGTGACACGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTcatgcaa                                                                                                                                        <  8:84458‑M2/145‑8 (MQ=255)           ggCGCAGGGTGAGTGACACGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTcatgcaa                                                                                                                                        >  7:84458‑M2/1‑138 (MQ=255)                           cacGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGa                                                                                                                    <  7:45831/149‑1 (MQ=255)                                    cTCCCTGGGTATCTGTTTTTCAGAAGCTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGa                                                                                                           <  8:31625/149‑1 (MQ=255)                                      cccGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCCCAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAGCTCGGACATGGGTGCgg                                                                                                         >  4:233880/1‑149 (MQ=255)                                       ccGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAggg                                                                                                        >  6:45135/1‑149 (MQ=255)                                       ccGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAggg                                                                                                        <  5:256720/149‑1 (MQ=255)                                           ggTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCttt                                                                                                    <  2:161583/149‑1 (MQ=255)                                            gTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTATCAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTg                                                                                                   <  1:303228/149‑1 (MQ=255)                                                 tGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCg                                                                                              >  1:40976/1‑149 (MQ=255)                                                   tttttCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTg                                                                                            <  4:318883/149‑1 (MQ=255)                                                             ggTACCCCATCTGTTTATAGATATTCCCAATGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCAAAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGGGAGGGCTTTGGCCCGTGGACCATTGGc                                                                                  <  5:184582/149‑1 (MQ=255)                                                                             ataGATCTTCCCTAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGAt                                                                                                                               <  8:146589/88‑1 (MQ=255)                                                                             ataGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCAGGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAAt                                                                   >  4:305130/1‑148 (MQ=255)                                                                              taGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAAt                                                                   >  1:139421/1‑147 (MQ=255)                                                                              taGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAAt                                                                   >  8:24076/1‑147 (MQ=255)                                                                                gATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGc                                                               <  5:45135/149‑1 (MQ=255)                                                                                  tCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGa                                                                       <  7:36420/139‑1 (MQ=255)                                                                                  tCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGa                                                                       >  8:36420/1‑139 (MQ=255)                                                                                   cTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCg                                                                           <  2:339177/134‑1 (MQ=255)                                                                                   cTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCg                                                                           >  1:339177/1‑134 (MQ=255)                                                                                    ttCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGAt                                                           >  6:181282/1‑149 (MQ=255)                                                                                    ttCCCAAGGGGGTGCGGAGAATCTAAAGAGCCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCATCTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAAAGAGCTTAt                                                           >  1:341519/1‑149 (MQ=255)                                                                                      cccAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATgg                                                         >  1:4359/1‑149 (MQ=255)                                                                                       ccAAGGGGGTGCGGAGAATCTTACGTGGCTTGCATGCAGTCACAAGTGCCTGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATgg                                                         <  2:341519/148‑1 (MQ=255)                                                                                       ccAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATgg                                                         <  2:198660/148‑1 (MQ=255)                                                                                       ccAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATgg                                                         <  4:169978/148‑1 (MQ=255)                                                                                       ccAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGAAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACACGGACATGGGTGAGGGCTTTTGCCCGTGTACCATTGGAGATGGCGTCTACAATAAGCTGATgtg                                                        >  7:328193/1‑147 (MQ=255)                                                                                        cAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGt                                                       <  3:265156/149‑1 (MQ=255)                                                                                        cAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGt                                                       >  3:369878/1‑149 (MQ=255)                                                                                          aGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCAATGGCGATGGCGGCGACAATGAGCTGATGGGtt                                                      >  5:336398/1‑148 (MQ=255)                                                                                                tGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATcag                                               <  2:40976/149‑1 (MQ=255)                                                                                                    gagaATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTGTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCagcagc                                           <  1:357680/149‑1 (MQ=255)                                                                                                             aCGTGACTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATc                                  >  5:48667/1‑149 (MQ=255)                                                                                                                   cTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACt                            <  2:139421/149‑1 (MQ=255)                                                                                                                    ttGCATGCAGTCACAAGTGCCAGGAGACGCGGTcatgcaagccacgttagattctccgcacccccttgggaagat                                                                                                     <  3:27464‑M2/75‑43 (MQ=255)                                                                                                                    ttGCATGCAGTCACAAGTGCCAGGAGACGCGGTcatgcaagccacgttagattctccgcacccccttgggaagat                                                                                                     >  4:27464‑M2/1‑33 (MQ=255)                                                                                                                    ttGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACTg                           >  6:263060/1‑149 (MQ=255)                                                                                                                       catgcaGTCACAAGTGCCAGGAGACGCGGTcatgcaagccacgttagattctccgcacccccttgggaagatctataaacagatggggtaccttctgaaaaacagataccccgggagcctaccgtgtcactcaccctgagccaggtccg                        <  1:264442‑M2/149‑120 (MQ=255)                                                                                                                              tCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACTGGTTTCCATGc                 <  6:48667/149‑1 (MQ=255)                                                                                                                                       ccAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATgg                                                         >  6:52868/1‑100 (MQ=255)                                                                                                                                       ccAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATgg                                                         <  5:52868/100‑1 (MQ=255)                                                                                                                                        cAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACTGGTTTCCATGCCggggtcgcc       >  8:327076/1‑142 (MQ=255)                                                                                                                                           gagaCGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACTGGTTTCCATGCCGGCGACCCCgg     >  7:127754/1‑148 (MQ=255)                                                                                                                                             gaCGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACTGGTTTCCATGCCGGGGTCGCCGGCat  <  7:327076/149‑2 (MQ=255)                                                                                                                                              aCGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACTGGTTTCCATGCCGGCGACCCCGGCAc  >  8:5874/1‑148 (MQ=255)                                                                                                                                                   gTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCGGTGGACCATTGGCGATGGCGTCGAc                                                                      <  4:37467/75‑1 (MQ=255)                                                                                                                                                   gTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGAc                                                                      >  3:37467/1‑75 (MQ=255)                                                                                                                                                    |                                                                                                                                              TAGCGGACCTGGCGCAGGGTGAGTGACACGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACTGGTTTCCATGCCGGCGACCCCGGCAC  >  NC_002947/3320117‑3320405

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.