| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3398681 | 70 (1.160) | 4 (0.070) | 4/256 | NT | 5.2% | coding (339/438 nt) | aroQ‑III | type II 3‑dehydroquinate dehydratase |
| ? | NC_002947 | = 3398709 | 77 (1.320) | coding (367/438 nt) | aroQ‑III | type II 3‑dehydroquinate dehydratase | |||||
CGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTACGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGCACATGTCCAACATTCATGCCAGGGAGCCATTCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3398558‑3398681‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcGCACCACCTCGGCAAATACCGAGTGATGGCGGAATGGCTCCCTGGCATGAATGTTGGACATGTGCACTTCAACCACCGGCACTTCGATAATGGCCAACGCATCACGAATGCCGTAGCTGTAATGGGTCCAGGCACCGGCATTGATC < NC_002947/3398709‑3398564 CGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTACGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGCACATGTCCAACATTCATGCCAGGGAGCCATTCCGC‑CATCA‑CTCGGCAAATACCGAGTGAT < 5:275848/149‑1 GATCAATGCCGGTGCCTGGACCCATTACAGCTACGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGCACATGTCCAACATTCATGCCAGGGAGCCATTCCGCGCACCACCTCGGCAAATACCGAGTGATGGCG > 1:87143/1‑149 ATGCCGGTGCCTGGACCCATTACAGCTACGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGCACATGTCCAACATTCATGCCAGGGAGCCATTCCGCGCACCACCTCGGCAAATACCGAGTGATGGCGGAATG < 6:268406/149‑1 CCGGTGCCTGGACCCATTACAGCTACGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGCACATGTCCAACATTCATGCCAGGGAGCCATTCCGCGCACCACCTCGGCAAATACCGAGTGATGGCGGAATGGCT < 2:87143/149‑1 ctCGCACCACCTCGTCAAATACCGACTCATGGAGGAATTGCTCCCAGCCATGAATGTTGGACATGTGCACTTCAACCACAGGCACTTCGATAATGGCCAACGCATCACGAATGCCTTAGCTGTAATGGGTCCAGGCACCTGCATTGATC < 7:172059/147‑1 GCGCACCACCTCGGCAAATACCGAGTGATGGCGGAATGGCTCCCTGGCATGAATGTTGGACATGTGCACTTCAACCACCGGCACTTCGATAATGGCCAACGCATCACGAATGCCGTAGCTGTAATGGGTCCAGGCACCGGCATTGAT > 1:27262/1‑147 CGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTACGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGGTGGTTGAAGTGCACATGTCCAACATTCATGCCAGGGAGCCATTCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3398558‑3398681‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcGCACCACCTCGGCAAATACCGAGTGATGGCGGAATGGCTCCCTGGCATGAATGTTGGACATGTGCACTTCAACCACCGGCACTTCGATAATGGCCAACGCATCACGAATGCCGTAGCTGTAATGGGTCCAGGCACCGGCATTGATC < NC_002947/3398709‑3398564 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |