New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3613444 =	41 (0.680)	3 (0.050)	3/256	NT	7.5%	coding (240/3396 nt)	mcoA	Mn(II) copper oxidase A
	?	NC_002947	3613484 =	34 (0.580)					coding (200/3396 nt)	mcoA	Mn(II) copper oxidase A

CGGCCATGGCCTCTCCCCTCGACGACAACAGCATGCCCCCGCCAACCGACCCGTCGGCCTACACCGACCAGCCGGACGACCCGACGTCTGCCTTGCTTGAGCTGAACACCATGCCAGAGGCCAACGAAGGCTCGCTGGAGTTGACCGATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3613595‑3613444 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAGGGGAGAGGCCATGGCCGTGATCAACCCGAGGCTGATCATCAGTGCAGTGA  >  NC_002947/3613484‑3613628                                                                                                                                                                                                                                                                                                           CGGCCATGGCCTCTCCCCTCGACGACAACAGCATGCCCCCGCCAACCGACCCGTCGGCCTACACCGACCAGCCGGACGACCCGACGTCTGCCTTGCTTGAGCTGAACACCATGCCAGAGGCCAACGAAGGCTCGCTGGAGTTGACCGAT                                                                                                                                                      >  3:112733/1‑149                                 ATGCCCCCGCCAACCGACCCGTCGGCCTACACCGACCAGCCGGACGACCCGACGTCTGCCTTGCTTGAGCTGAACACCATGCCAGAGGCCAACGAAGGCTCGCTGGAGTTGACCGATGGC                                                                                                                                                   <  5:267535/120‑1                                 ATGCCCCCGCCAACCGACCCGTCGGCCTACACCGACCAGCCGGACGACCCGACGTCTGCCTTGCTTGAGCTGAACACCATGCCAGAGGCCAACGAAGGCTCGCTGGAGTTGACCGATGGC                                                                                                                                                   >  6:267535/1‑120                                                                                                                TGCCAGAGGCCAACGAAGGCTCGCTGGAGTTGACCGATGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAGGGGAGAGGCCATG                                       >  3:65965/1‑149                                                                                                                  CCAGAGGCCAACGAAGGCTCGCTGGAGTTGACCGATGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAGGGGAGAGGCCATGGC                                     >  1:223859/1‑149                                                                                                                   CAGAGGCCAACGAAGGCTCGCTGGAGTTGACCGATGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAGGGGAGAGGCCATGGCC                                    >  3:89095/1‑149                                                                                                                                                        CATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAGGGGAGAGGCCATGGCCGTGATCAACCCGAGGCTGATCATCAGTGCAGTGA  >  5:18880/1‑146                                                                                                                                                                                                                                                                                                           CGGCCATGGCCTCTCCCCTCGACGACAACAGCATGCCCCCGCCAACCGACCCGTCGGCCTACACCGACCAGCCGGACGACCCGACGTCTGCCTTGCTTGAGCTGAACACCATGCCAGAGGCCAACGAAGGCTCGCTGGAGTTGACCGATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3613595‑3613444 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAGGGGAGAGGCCATGGCCGTGATCAACCCGAGGCTGATCATCAGTGCAGTGA  >  NC_002947/3613484‑3613628

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.