New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3613444 =	41 (0.680)	3 (0.050)	3/256	NT	7.5%	coding (240/3396 nt)	mcoA	Mn(II) copper oxidase A
	?	NC_002947	3613484 =	34 (0.580)					coding (200/3396 nt)	mcoA	Mn(II) copper oxidase A

CGCACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAGGGGAGAGGCCATGGCCGTGATCAACCCGAGGCTGATCATCAGTGCAGTGA  >  NC_002947/3613336‑3613628                                                                                                                                                     |                                                                                                                                                 catggcctctcccctcgacgacaacagcatgcccccgccaaccgacccgtcggcctacaccgaccagccggacgacccgacgtctgccttgcttgagctgaacaccatGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCa                                                                                                                                                  >  3:65965‑M1/109‑149 (MQ=255)   cACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATg                                                                                                                                                <  8:245990/149‑1 (MQ=255)    aCCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATgg                                                                                                                                               >  2:305669/1‑149 (MQ=255)    aCCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATg                                                                                                                                                >  1:129397/1‑148 (MQ=255)    aCCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATg                                                                                                                                                <  2:129397/148‑1 (MQ=255)          caacGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGtt                                                                                                                                           >  6:218526/1‑147 (MQ=255)          caacGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCa                                                                                                                                         <  6:142872/149‑1 (MQ=255)           aacGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAg                                                                                                                                        <  2:22890/149‑1 (MQ=255)                gCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTcaa                                                                                                                                   <  4:158405/149‑1 (MQ=255)                         gCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAgg                                                                                                                             >  5:77021/1‑146 (MQ=255)                                gTAGGATACTTGTCCGACGTTTGCAGGTCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTTCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCgg                                                                                                                   <  3:49296/149‑1 (MQ=255)                                 tAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCggg                                                                                                                  <  5:239920/149‑1 (MQ=255)                                         ttGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGAGCGGACTCAGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGGTCAAGCAAGCCAGACCTCGCGTCGTCCgg                                                                                                          >  5:332206/1‑149 (MQ=255)                                            tCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTg                                                                                                       >  4:339467/1‑149 (MQ=255)                                                aCGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCg                                                                                                   <  1:305669/149‑1 (MQ=255)                                                  gTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGgt                                                                                                 <  5:125007/149‑1 (MQ=255)                                                       cagggcaggTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAg                                                                                             <  4:220188/148‑1 (MQ=255)                                                          ggcaggTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCGGGCTGGTCGGTGTAGGCCg                                                                                         >  2:161443/1‑149 (MQ=255)                                                                    agctCGTTGTCGGTGCGGACTGTGTTGGGGTCGCCATACACTCCATCGGTCATCTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGt                                                                               <  6:332206/149‑1 (MQ=255)                                                                    agcaCGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGt                                                                               >  6:13676/1‑149 (MQ=255)                                                                     gcaCGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGtt                                                                              <  5:168576/149‑1 (MQ=255)                                                                      caCGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTg                                                                             >  8:334740/1‑149 (MQ=255)                                                                                  gCGGTCTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCGGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGc                                                                 >  4:239447/1‑149 (MQ=255)                                                                                      aCTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCtgtt                                                             <  5:218526/149‑1 (MQ=255)                                                                                                ggTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAgg                                                   <  7:157697/149‑1 (MQ=255)                                                                                                ggTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAgg                                                   >  1:161079/1‑149 (MQ=255)                                                                                                 gTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAggg                                                  <  5:13676/149‑1 (MQ=255)                                                                                                     ccATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAGGGga                                                >  3:111709/1‑147 (MQ=255)                                                                                                         acacGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAGGGGAGAGGc                                           >  7:353970/1‑148 (MQ=255)                                                                                                            tgccagaggccaacgaaggctcgctggagttgaccgatggcATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAGGGGAGAGGCCATg                                       >  3:65965‑M2/42‑149 (MQ=255)                                                                                                             GCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCAt                                                                   <  5:267535‑M1/120‑1 (MQ=255)                                                                                                             GCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCAt                                                                   >  6:267535‑M1/1‑120 (MQ=255)                                                                                                              ccagaggccaacgaaggctcgctggagttgaccgatggcATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAGGGGAGAGGCCATGGc                                     >  1:223859‑M2/40‑149 (MQ=255)                                                                                                               cagaggccaacgaaggctcgctggagttgaccgatggcATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAGGGGAGAGGCCATGGcc                                    >  3:89095‑M2/39‑149 (MQ=255)                                                                                                                ATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAGGGGAGAGGCCATGGCCg                                   >  3:112733‑M1/1‑149 (MQ=255)                                                                                                                 ccgctCACCTCCCGCGAGCCTTCGTTGGCCTCTGCCATGGGGTTCAGCTCAAGCAAGGCTGACGTCGGGGCGGCCGGCTGGTCGGTGGAGGCCGACGGGGCGGTTGGCGGGGGCATGCTGTTGTCGTCGAGGGGACAGGCCATGGCCGt                                  <  5:300493/145‑1 (MQ=255)                                                                                                                   ggTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGGCGTCCGGCTGGTCGGTGTAGGCCGACGGGGCGGTTGTCGGGGGCATGCTGTTGTCGTCTAGGGGAGAGGCCATGGCCGTg                                 <  3:239447/148‑1 (MQ=255)                                                                                                                    gTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAGGGGAGAGGCCATGGCCGTGa                                >  3:54679/1‑148 (MQ=255)                                                                                                                     tCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAGGGGAGAGGCCATGGCCGTGAt                               >  6:141812/1‑148 (MQ=255)                                                                                                                        aCTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAGGGGAGAGGCCATGGCCGTGATCAAc                           <  6:295738/149‑1 (MQ=255)                                                                                                                               cGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAGGGGAGAGGCCATGGCCGTGATCAACCCGAGGc                    <  7:334740/149‑1 (MQ=255)                                                                                                                                    cTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGATGTCGTCGAGGGGAGAGGCCATGGCCGTGATCAACCCGAGGCTGat                >  2:169620/1‑148 (MQ=255)                                                                                                                                        gTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAGGGGAGAGGCCATGGCCGTGATCAACCCGAGGCTGAccatca           <  8:353970/149‑1 (MQ=255)                                                                                                                                         ttGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAGGGGAGAGGCCATGGCCGTGATCAACCCGAGGCTGATCATcag          >  4:189324/1‑149 (MQ=255)                                                                                                                                           ggCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAGGGGAGAGGCCATGGCCGTGATCAACCCGAGGCTGATCATcagtg        >  1:201848/1‑149 (MQ=255)                                                                                                                                            gCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAGGGGAGAGGCCATGGCCGTGATCAGCCTCGGGTTGatcacggctct       >  3:194029/1‑142 (MQ=255)                                                                                                                                            gCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAGGGGAGAGGCCATGGCCGTGATCAACCCGAGGCTGATCATcagtg        <  3:339467/148‑1 (MQ=255)                                                                                                                                             ccTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGgtg                                                                                                >  3:352711/1‑59 (MQ=255)                                                                                                                                             ccTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGgtg                                                                                                <  4:352711/59‑1 (MQ=255)                                                                                                                                             ccTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAGGGGAGAGGCCATGGc                                     <  3:353134/118‑1 (MQ=255)                                                                                                                                             ccTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAGGGGAGAGGCCATGGc                                     >  4:353134/1‑118 (MQ=255)                                                                                                                                             ccTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAGGGGAGAGGCCATGGCCGTGATCAACCCGAGGCTGATCATcagtgca      <  4:111709/149‑1 (MQ=255)                                                                                                                                                    cATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAGGGGAGAGGCCATGGCCGTGATCAACCCGAGGCTGATCATCAGTGCAGTGa  >  5:18880‑M2/2‑146 (MQ=255)                                                                                                                                                     |                                                                                                                                                 CGCACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAGGGGAGAGGCCATGGCCGTGATCAACCCGAGGCTGATCATCAGTGCAGTGA  >  NC_002947/3613336‑3613628

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.