New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3613444 =	41 (0.680)	3 (0.050)	3/256	NT	7.5%	coding (240/3396 nt)	mcoA	Mn(II) copper oxidase A
	?	NC_002947	3613484 =	34 (0.580)					coding (200/3396 nt)	mcoA	Mn(II) copper oxidase A

CGAATTCTTCGAACAGTAACAGTTGCTGGGTGAATGGTTGCGCACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAGGGGAGAGGC  >  NC_002947/3613296‑3613587                                                                                                                                                     |                                                                                                                                                cGAATTCTTCGAACAGTAACAGTTGCTGGGTGAATGGTTGCGCACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACg                                                                                                                                                 <  5:158990/149‑1 (MQ=255)    tcactgcactgatgatcagcctcgggttgatcacggccatggcctctcccctcgacgacaacagcatgcccccgccaaccgacccgtcggcctacaccgaccagccggacgacccgacgtctgccttgcttgagctgaacaccatg                                                                                                                                                 >  5:18880‑M1/146‑146 (MQ=255)    aTTCTTCGAACAGTAACAGTTGCTGGGTGAATGGTTGCGCACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCa                                                                                                                                              >  4:112733/1‑149 (MQ=255)        ttcGAACAGTAACAGTTGCTGGGTGAATGGTTGCGCACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCgg                                                                                                                                          >  6:168576/1‑149 (MQ=255)          cGAACAGTAATCGTTGCTGGGTGATTGGTTGCTCACCGAACTACGGGCGGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGGCATACACGCCATCg                                                                                                                                           <  4:234912/146‑1 (MQ=255)           gAACAGTAACAGTTGCTGGGTGAATGGTTGCGCACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTc                                                                                                                                        >  6:125007/1‑148 (MQ=255)                   acagtTGCTGGGTGAATGGTTGCGCACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGc                                                                                                                               >  6:239920/1‑149 (MQ=255)                   acagtTGCTGGGTGAATGGTTGCGCACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGc                                                                                                                               <  1:20106/149‑1 (MQ=255)                    cagtTGCTGGGTGAATGGGTGCGCACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGTTACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGc                                                                                                                               <  4:77969/148‑1 (MQ=255)                     agtTGCTGGGTGAATGGTTGCGCACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGa                                                                                                                             <  1:358880/149‑1 (MQ=255)                       ttGCTGTGTGAATGGTTGCGCACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGc                                                                                                                           <  7:159050/149‑1 (MQ=255)                              gTGAATGGTTGCGCACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTc                                                                                                                                        <  1:371768/129‑1 (MQ=255)                              gTGAATGGTTGCGCACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTc                                                                                                                                        >  2:371768/1‑129 (MQ=255)                                 aaTGGTTGCGCACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTgg                                                                                                                  <  6:228108/148‑1 (MQ=255)                                   tGGTTGCGCACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCct                                                                                                               >  7:245990/1‑149 (MQ=255)                                      ggccatggcctctcccctcgacgacaacagcatgcccccgccaaccgacccgtcggcctacaccgaccagccggacgacccgacgtctgccttgcttgagctgaacaccatGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTg                                                                                                            >  3:89095‑M1/112‑149 (MQ=255)                                       gccatggcctctcccctcgacgacaacagcatgcccccgccaaccgacccgtcggcctacaccgaccagccggacgacccgacgtctgccttgcttgagctgaacaccatGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTgg                                                                                                           >  1:223859‑M1/111‑149 (MQ=255)                                        gcgcACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGc                                                                                                          >  5:93469/1‑149 (MQ=255)                                         cgcACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGc                                                                                                          <  7:22507/148‑1 (MQ=255)                                         catggcctctcccctcgacgacaacagcatgcccccgccaaccgacccgtcggcctacaccgaccagccggacgacccgacgtctgccttgcttgagctgaacaccatGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCa                                                                                                         >  3:65965‑M1/109‑149 (MQ=255)                                           cACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATg                                                                                                       <  8:245990/149‑1 (MQ=255)                                            aCCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATgg                                                                                                      >  2:305669/1‑149 (MQ=255)                                            aCCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATg                                                                                                       >  1:129397/1‑148 (MQ=255)                                            aCCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATg                                                                                                       <  2:129397/148‑1 (MQ=255)                                                  caacGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGtt                                                                                                  >  6:218526/1‑147 (MQ=255)                                                  caacGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCa                                                                                                <  6:142872/149‑1 (MQ=255)                                                   aacGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAg                                                                                               <  2:22890/149‑1 (MQ=255)                                                        gCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTcaa                                                                                          <  4:158405/149‑1 (MQ=255)                                                                 gCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAgg                                                                                    >  5:77021/1‑146 (MQ=255)                                                                        gTAGGATACTTGTCCGACGTTTGCAGGTCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTTCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCgg                                                                          <  3:49296/149‑1 (MQ=255)                                                                         tAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCggg                                                                         <  5:239920/149‑1 (MQ=255)                                                                                 ttGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGAGCGGACTCAGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGGTCAAGCAAGCCAGACCTCGCGTCGTCCgg                                                                 >  5:332206/1‑149 (MQ=255)                                                                                    tCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTg                                                              >  4:339467/1‑149 (MQ=255)                                                                                        aCGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCg                                                          <  1:305669/149‑1 (MQ=255)                                                                                          gTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGgt                                                        <  5:125007/149‑1 (MQ=255)                                                                                               cagggcaggTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAg                                                    <  4:220188/148‑1 (MQ=255)                                                                                                  ggcaggTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCGGGCTGGTCGGTGTAGGCCg                                                >  2:161443/1‑149 (MQ=255)                                                                                                            agctCGTTGTCGGTGCGGACTGTGTTGGGGTCGCCATACACTCCATCGGTCATCTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGt                                      <  6:332206/149‑1 (MQ=255)                                                                                                            agcaCGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGt                                      >  6:13676/1‑149 (MQ=255)                                                                                                             gcaCGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGtt                                     <  5:168576/149‑1 (MQ=255)                                                                                                              caCGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTg                                    >  8:334740/1‑149 (MQ=255)                                                                                                                          gCGGTCTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCGGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGc                        >  4:239447/1‑149 (MQ=255)                                                                                                                              aCTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCtgtt                    <  5:218526/149‑1 (MQ=255)                                                                                                                                        ggTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAgg          <  7:157697/149‑1 (MQ=255)                                                                                                                                        ggTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAgg          >  1:161079/1‑149 (MQ=255)                                                                                                                                         gTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAggg         <  5:13676/149‑1 (MQ=255)                                                                                                                                             ccATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAGGGga       >  3:111709/1‑147 (MQ=255)                                                                                                                                                 acacGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAGGGGAGAGGc  >  7:353970/1‑148 (MQ=255)                                                                                                                                                     GCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCAt                          >  6:267535‑M1/1‑120 (MQ=255)                                                                                                                                                     GCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCAt                          <  5:267535‑M1/120‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                CGAATTCTTCGAACAGTAACAGTTGCTGGGTGAATGGTTGCGCACCGAACAACGGGCTGGGTTTGCCGTTGGTAGGATACTTGTCCGACGTTTGCAGGGCAGGTGGCAGCACGTTGTCGGTGCGGACTGTGTTGCGGTCGCCATACACGCCATCGGTCAACTCCAGCGAGCCTTCGTTGGCCTCTGGCATGGTGTTCAGCTCAAGCAAGGCAGACGTCGGGTCGTCCGGCTGGTCGGTGTAGGCCGACGGGTCGGTTGGCGGGGGCATGCTGTTGTCGTCGAGGGGAGAGGC  >  NC_002947/3613296‑3613587

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.