New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4023722 =	38 (0.630)	4 (0.070)	4/254	NT	9.5%	coding (787/1536 nt)	emrB	multidrug transporter permease
	?	NC_002947	4023746 =	40 (0.690)					coding (763/1536 nt)	emrB	multidrug transporter permease

CCTTGCAGGTAGTGCTGGACAAGGGCAACGATCTGGACTGGTTCGAATCGTCGTTCATCATTGTCGGCAGCCTGATTTCGGTGGTGTTCCTGGCGGTGTTCGTGATCTGGGAGCTGACCGACCGGCACCCGGT‑GGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4023859‑4023722 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcaGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAGGCACCGACGCCGATAATCAGGGTCAGCAGGCCAAT  >  NC_002947/4023746‑4023893                                                                                                                                                                                                                                                                                                 CCTTGCAGGTAGTGCTGGACAAGGGCAACGATCTGGACTGGTTCGAATCGGCGTTCATCATTGTCGGTAGCCTGATTTCGGTGGTGTTCCTGGCGGTGTTCGTGATCTGGGAGCTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATC                                                                                                                                           <  1:371555/149‑1                                                                                                                  CTGACCGACCGGCACCCGGT‑GGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAAC                                                                            >  1:1709/1‑99                                                                                                                  CTGACCGACCGGCACCCGGT‑GGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAAC                                                                            <  2:1709/99‑1                                                                                                                    GACCGACCGGCACCCGGT‑GGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAGGCACCGACGCCGA                        >  2:270918/1‑149                                                                                                                                       GGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAGGCACCGACGCCGATAATCAGGG               >  7:135381/1‑140                                                                                                                                       GGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAGGCACCGACGCCGATAATCAGGG               <  8:135381/140‑1                                                                                                                                        GTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAGGCACCGAAGCCGATAATCAGGGTCAGCAGGC      >  7:212142/1‑148                                                                                                                                           AGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAGGCACCGACGCCGATAATCAGGGTCAGCAGGCCAAT  >  7:77240/1‑149                                                                                                                                           AGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCAGCAAGGCACCGACGCCGATAATCAGGGTCAGCAGGCCAAT  <  1:176289/149‑1                                                                                                                                           AGCTCCCAGATCACGAACACCGCAAGGAACACCACCGAAATCAGGATGCCGACAATGATGAACGACGATTCGAACCAATCCAGATCGTTGCACTTGTCCAGCACTACCTGCAAGGCACCGACGCCGATAATCAGGGTCAGCAGGACAAT  >  5:283269/1‑149                                                                                                                                                                                                                                                                                                 CCTTGCAGGTAGTGCTGGACAAGGGCAACGATCTGGACTGGTTCGAATCGTCGTTCATCATTGTCGGCAGCCTGATTTCGGTGGTGTTCCTGGCGGTGTTCGTGATCTGGGAGCTGACCGACCGGCACCCGGT‑GGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4023859‑4023722 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcaGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAGGCACCGACGCCGATAATCAGGGTCAGCAGGCCAAT  >  NC_002947/4023746‑4023893

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.