New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4023722 =	38 (0.630)	4 (0.070)	4/254	NT	9.5%	coding (787/1536 nt)	emrB	multidrug transporter permease
	?	NC_002947	4023746 =	40 (0.690)					coding (763/1536 nt)	emrB	multidrug transporter permease

ACCGCCAGGCCTGCCCAGGTCGCGGTATAGCCCATCTGCGTCTGCAACCACTGCGGCAGGATCAGGTTGATACCGAAGAACCCGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAGGCACCGACGCC  >  NC_002947/4023574‑4023869                                                                                                                                                     |                                                                                                                                                     attgtcctgctgaccctgattatcggcgtcggtgccttgcaggtagtgctggacaagtgcaacgatctggattggttcgaatcgtcgttcatcattgtcggcatcctgatttcggtggtgttccttgcggtgttcgtgatctgggagct                                                                                                                                                      >  5:283269‑M1/149‑149 (MQ=255) attggcctgctgaccctgattatcggcgtcggtgccttgctggtagtgctggacaagggcaacgatctggactggttcgaatcgtcgttcatcattgtcggcagcctgatttcggtggtgttcctggcggtgttcgtgatctgggagct                                                                                                                                                      <  1:176289‑M1/1‑1 (MQ=255) attggcctgctgaccctgattatcggcgtcggtgccttgcaggtagtgctggacaagggcaacgatctggactggttcgaatcgtcgttcatcattgtcggcagcctgatttcggtggtgttcctggcggtgttcgtgatctgggagct                                                                                                                                                      >  7:77240‑M1/149‑149 (MQ=255)     gcctgctgaccctgattatcggcttcggtgccttgcaggtagtgctggacaagggcaacgatctggactggttcgaatcgtcgttcatcattgtcggcagcctgatttcggtggtgttcctggcggtgttcgtgatctgggagcTGac                                                                                                                                                   >  7:212142‑M1/145‑148 (MQ=255)     ccAGGCCTGCCCAGGTCGCGGTATAGCCCATCTGCGTCTGCAACCACTGCGGCAGGATCAGGTTGATACCGAAGAACCCGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGacc                                                                                                                                                  <  3:340600/149‑1 (MQ=255)              ccctgattatcggcgtcggtgccttgcaggtagtgctggacaagggcaacgatctggactggttcgaatcgtcgttcatcattgtcggcagcctgatttcggtggtgttcctggcggtgttcgtgatctgggagcTGacc                                                                                                                                                  <  8:135381‑M1/5‑1 (MQ=255)              ccctgattatcggcgtcggtgccttgcaggtagtgctggacaagggcaacgatctggactggttcgaatcgtcgttcatcattgtcggcagcctgatttcggtggtgttcctggcggtgttcgtgatctgggagcTGacc                                                                                                                                                  >  7:135381‑M1/136‑140 (MQ=255)              cccAGGTCGCGGTATAGCCCATCTGCGTCTTCAACCACTGCGGCAGGATCAGGTTGATACCGAAGAACCCGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGt                                                                                                                                          <  2:25555/147‑1 (MQ=255)              cccAGGTCGCGGTATAGCCCATCTGCGTCTGCAACCACTGCGGCAGGATCAGGTTGATACCGAAGAACCCGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGt                                                                                                                                          <  8:118342/147‑1 (MQ=255)              cccAGGTCGCGGTATAGCCCATCTGCGTCTGCAACCACTGCGGCAGGATCAGGTTGATACCGAAGAACCCGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGc                                                                                                                                        <  2:180890/149‑1 (MQ=255)                    tCGCGGTATAGCCCATCTGCGTCTGCAACCACTGCGGCAGGATCAGGTTGATACCGAAGAACCCGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCcggtcg                                                                                                                                  <  2:131917/149‑1 (MQ=255)                       tcggcgtcggtgccttgcaggtagtgctggacaagggcaacgatctggactggttcgaatcgtcgttcatcattgtcggcagcctgatttcggtggtgttcctggcggtgttcgtgatctgggagcTGACC‑ACCGGGTGCCggtcggtc                                                                                                                               >  2:270918‑M1/127‑149 (MQ=255)                                   tCTGCGTCTGCAACCACTGCGGCAGGATCAGGTTGATACCGAAGAACCCGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTccc                                                                                                                        <  2:97265/144‑1 (MQ=255)                                   tCTGCGTCTGCAACCACTGCGGCAGGATCAGGTTGATACCGAAGAACCCGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTccc                                                                                                                        >  1:97265/1‑144 (MQ=255)                                       cGTCTGCAACCACTGCGGCAGGATCAGGTTGATACCGAAGAACCCGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACg                                                                                                                <  4:101762/148‑1 (MQ=255)                                       cGTCTGCAACCACTGCGGCAGGATCAGGTTGATACCGAAGAACCCGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACg                                                                                                                >  5:64246/1‑148 (MQ=255)                                       cGTCTGCAACCACTGCGGCAGGATCAGGTTGATACCGAAGAACCCGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGa                                                                                                               <  6:64246/149‑1 (MQ=255)                                         gcTGCAACCACTGCGGCAGGATCAGGTTGATACCGAAGAACCCGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAac                                                                                                             <  2:263692/148‑1 (MQ=255)                                                              tCAGGTTGATACCGAAGAACCCGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGa                                                                                         >  7:190915/1‑148 (MQ=255)                                                                   ttGATACCGAAGAACCCGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAg                                                                                   <  4:340839/149‑1 (MQ=255)                                                                     gATACCGAAGAACCCGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGc                                                                                 >  5:297130/1‑149 (MQ=255)                                                                         ccGAAGAACCCGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGcc                                                                             <  3:342420/149‑1 (MQ=255)                                                                          cGAAGAACCCGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAGCACCACCGAAATCAGGCTGcc                                                                             >  8:99295/1‑148 (MQ=255)                                                                           gttcgaatcgtcgttcatcattgtcggcagcctgatttcggtggtgttcctggcggtgttcgtgatctgggagcTGACC‑ACCGGGTGCCGGTCGGTCAg                                                                                                                             >  1:1709‑M1/75‑99 (MQ=255)                                                                           gttcgaatcgtcgttcatcattgtcggcagcctgatttcggtggtgttcctggcggtgttcgtgatctgggagcTGACC‑ACCGGGTGCCGGTCGGTCAg                                                                                                                             <  2:1709‑M1/25‑1 (MQ=255)                                                                           gaagaaCCCGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGc                                                                                                        >  4:332925/1‑120 (MQ=255)                                                                           gaagaaCCCGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGc                                                                                                        <  3:332925/120‑1 (MQ=255)                                                                                 cccGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGaa                                                                                                  <  1:10921/120‑1 (MQ=255)                                                                                 cccGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGaa                                                                                                  >  2:10921/1‑120 (MQ=255)                                                                                 cccGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAatga                                                                     >  1:198458/1‑149 (MQ=255)                                                                                  ccGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGCCC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAatgat                                                                    >  6:116016/1‑149 (MQ=255)                                                                                  ccGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAatgat                                                                    >  5:294720/1‑149 (MQ=255)                                                                                                       acaATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAAGCAGGCTGCCGACAATGATGAAAGACGATTCGAACCAGTc                                               >  6:343092/1‑149 (MQ=255)                                                                                                        caATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCACATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAAAGATGAACGACGATTCGAACCAGTc                                               >  4:65440/1‑148 (MQ=255)                                                                                                         aaTGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTc                                               >  1:142772/1‑147 (MQ=255)                                                                                                          aTGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAatgat                                                                    >  1:227618/1‑125 (MQ=255)                                                                                                          aTGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAatgat                                                                    <  2:227618/125‑1 (MQ=255)                                                                                                                  aaTGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGc                                    <  4:362199/149‑1 (MQ=255)                                                                                                                   aTGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTg                                     >  2:155043/1‑147 (MQ=255)                                                                                                                   aTGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTg                                     <  1:155043/147‑1 (MQ=255)                                                                                                                       ggAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTg                               >  7:252024/1‑149 (MQ=255)                                                                                                                              gCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCa                        >  2:176289/1‑149 (MQ=255)                                                                                                                               cGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATCATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCa                        >  1:86783/1‑148 (MQ=255)                                                                                                                                          gatctgggagcTGACCGACCGGCACCCGGT‑GGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTACCGACAATGATGAACGCCGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAgg            <  1:371555‑M1/138‑1 (MQ=255)                                                                                                                                           aGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAgg            >  7:24330/1‑148 (MQ=255)                                                                                                                                            ggCGCAAGTTGACC‑ACCGGGTTCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGTAACAACACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAGGCa          <  5:174258/149‑1 (MQ=255)                                                                                                                                             gcgcAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAGGCAc         >  6:216934/1‑149 (MQ=255)                                                                                                                                             gcgcAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAGGCAc         <  2:118050/149‑1 (MQ=255)                                                                                                                                               gcAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAGGCAcc        >  1:198785/1‑148 (MQ=255)                                                                                                                                                    ttGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAGGCACCGACgac  >  4:109052/1‑147 (MQ=255)                                                                                                                                                    ttGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAGGCACCGACGcc  <  8:252024/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     ACCGCCAGGCCTGCCCAGGTCGCGGTATAGCCCATCTGCGTCTGCAACCACTGCGGCAGGATCAGGTTGATACCGAAGAACCCGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAGGCACCGACGCC  >  NC_002947/4023574‑4023869

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.