New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4023722 =	38 (0.630)	4 (0.070)	4/254	NT	9.5%	coding (787/1536 nt)	emrB	multidrug transporter permease
	?	NC_002947	4023746 =	40 (0.690)					coding (763/1536 nt)	emrB	multidrug transporter permease

TCTGCGTCTGCAACCACTGCGGCAGGATCAGGTTGATACCGAAGAACCCGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAGGCACCGACGCCGATAATCAGGGTCAGCAGGCCAATG  >  NC_002947/4023608‑4023894                                                                                                                                            |                                                                                                                                                     tCTGCGTCTGCAACCACTGCGGCAGGATCAGGTTGATACCGAAGAACCCGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTccc                                                                                                                                                 <  2:97265/144‑1 (MQ=255) tCTGCGTCTGCAACCACTGCGGCAGGATCAGGTTGATACCGAAGAACCCGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTccc                                                                                                                                                 >  1:97265/1‑144 (MQ=255)  ccttgcaggtagtgctggacaagggcaacgatctggactggttcgaatcggcgttcatcattgtcggtagcctgatttcggtggtgttcctggcggtgttcgtgatctgggagctgaccaccgggtgccggtcggtcaGCTCCCAGATc                                                                                                                                            <  1:371555‑M2/11‑1 (MQ=255)     cGTCTGCAACCACTGCGGCAGGATCAGGTTGATACCGAAGAACCCGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACg                                                                                                                                         >  5:64246/1‑148 (MQ=255)     cGTCTGCAACCACTGCGGCAGGATCAGGTTGATACCGAAGAACCCGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACg                                                                                                                                         <  4:101762/148‑1 (MQ=255)     cGTCTGCAACCACTGCGGCAGGATCAGGTTGATACCGAAGAACCCGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGa                                                                                                                                        <  6:64246/149‑1 (MQ=255)       gcTGCAACCACTGCGGCAGGATCAGGTTGATACCGAAGAACCCGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAac                                                                                                                                      <  2:263692/148‑1 (MQ=255)                            tCAGGTTGATACCGAAGAACCCGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGa                                                                                                                  >  7:190915/1‑148 (MQ=255)                                 ttGATACCGAAGAACCCGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAg                                                                                                            <  4:340839/149‑1 (MQ=255)                                   gATACCGAAGAACCCGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGc                                                                                                          >  5:297130/1‑149 (MQ=255)                                       ccGAAGAACCCGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGcc                                                                                                      <  3:342420/149‑1 (MQ=255)                                        cGAAGAACCCGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAGCACCACCGAAATCAGGCTGcc                                                                                                      >  8:99295/1‑148 (MQ=255)                                         gttcgaatcgtcgttcatcattgtcggcagcctgatttcggtggtgttcctggcggtgttcgtgatctgggagcTGACC‑ACCGGGTGCCGGTCGGTCAg                                                                                                                                                      >  1:1709‑M1/75‑99 (MQ=255)                                         gttcgaatcgtcgttcatcattgtcggcagcctgatttcggtggtgttcctggcggtgttcgtgatctgggagcTGACC‑ACCGGGTGCCGGTCGGTCAg                                                                                                                                                      <  2:1709‑M1/25‑1 (MQ=255)                                         gaagaaCCCGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGc                                                                                                                                 >  4:332925/1‑120 (MQ=255)                                         gaagaaCCCGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGc                                                                                                                                 <  3:332925/120‑1 (MQ=255)                                               cccGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGaa                                                                                                                           >  2:10921/1‑120 (MQ=255)                                               cccGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGaa                                                                                                                           <  1:10921/120‑1 (MQ=255)                                               cccGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAatga                                                                                              >  1:198458/1‑149 (MQ=255)                                                ccGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGCCC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAatgat                                                                                             >  6:116016/1‑149 (MQ=255)                                                ccGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAatgat                                                                                             >  5:294720/1‑149 (MQ=255)                                                                     acaATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAAGCAGGCTGCCGACAATGATGAAAGACGATTCGAACCAGTc                                                                        >  6:343092/1‑149 (MQ=255)                                                                      caATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCACATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAAAGATGAACGACGATTCGAACCAGTc                                                                        >  4:65440/1‑148 (MQ=255)                                                                       aaTGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTc                                                                        >  1:142772/1‑147 (MQ=255)                                                                        aTGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAatgat                                                                                             <  2:227618/125‑1 (MQ=255)                                                                        aTGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAatgat                                                                                             >  1:227618/1‑125 (MQ=255)                                                                                aaTGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGc                                                             <  4:362199/149‑1 (MQ=255)                                                                                 aTGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTg                                                              <  1:155043/147‑1 (MQ=255)                                                                                 aTGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTg                                                              >  2:155043/1‑147 (MQ=255)                                                                                     ggAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTg                                                        >  7:252024/1‑149 (MQ=255)                                                                                            gCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCa                                                 >  2:176289/1‑149 (MQ=255)                                                                                             cGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATCATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCa                                                 >  1:86783/1‑148 (MQ=255)                                                                                                        gatctgggagcTGACCGACCGGCACCCGGT‑GGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTACCGACAATGATGAACGCCGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAgg                                     <  1:371555‑M1/138‑1 (MQ=255)                                                                                                         aGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAgg                                     >  7:24330/1‑148 (MQ=255)                                                                                                          ggCGCAAGTTGACC‑ACCGGGTTCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGTAACAACACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAGGCa                                   <  5:174258/149‑1 (MQ=255)                                                                                                           gcgcAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAGGCAc                                  <  2:118050/149‑1 (MQ=255)                                                                                                           gcgcAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAGGCAc                                  >  6:216934/1‑149 (MQ=255)                                                                                                             gcAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAGGCAcc                                 >  1:198785/1‑148 (MQ=255)                                                                                                                  ttGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAGGCACCGACgac                           >  4:109052/1‑147 (MQ=255)                                                                                                                  ttGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAGGCACCGACGcc                           <  8:252024/149‑1 (MQ=255)                                                                                                                   ctgaccgaccggcacccggtggtcaGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAAc                                                                             >  1:1709‑M2/26‑99 (MQ=255)                                                                                                                   ctgaccgaccggcacccggtggtcaGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAAc                                                                             <  2:1709‑M2/74‑1 (MQ=255)                                                                                                                     gaccgaccggcacccggtggtcaGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAGGCACCGACGCCGa                         >  2:270918‑M2/24‑149 (MQ=255)                                                                                                                          ccGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAGGCACCGACGCCGATAATc                    <  2:198458/149‑1 (MQ=255)                                                                                                                           cGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAGCACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAGGCACCGACGCCGATAATCa                   <  7:99295/149‑1 (MQ=255)                                                                                                                            gggTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAGGCACCGACGCCGATAATCAg                  <  6:297130/149‑1 (MQ=255)                                                                                                                                 ccGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAGGCACCGACGCCGATAATCAGGGt               >  5:256062/1‑147 (MQ=255)                                                                                                                                  cggtcggtCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCGGACAATGATGAACGACTATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAGGCACCGACGCCGATAATCAGGGTcag            <  2:86783/149‑1 (MQ=255)                                                                                                                                       ggtcaGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAGGCACCGACGCCGATAATCAggg                >  7:135381‑M2/6‑140 (MQ=255)                                                                                                                                       ggtcaGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAGGCACCGACGCCGATAATCAggg                <  8:135381‑M2/135‑1 (MQ=255)                                                                                                                                        gtcaGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAGGCACCGAAGCCGATAATCAGGGTCAGCAGGc       >  7:212142‑M2/5‑148 (MQ=255)                                                                                                                                           aGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAGGCACCGACGCCGATAATCAGGGTCAGCAGGCCAAt   >  7:77240‑M2/2‑149 (MQ=255)                                                                                                                                           aGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCAGCAAGGCACCGACGCCGATAATCAGGGTCAGCAGGCCAAt   <  1:176289‑M2/148‑1 (MQ=255)                                                                                                                                           aGCTCCCAGATCACGAACACCGCAAGGAACACCACCGAAATCAGGATGCCGACAATGATGAACGACGATTCGAACCAATCCAGATCGTTGCACTTGTCCAGCACTACCTGCAAGGCACCGACGCCGATAATCAGGGTCAGCAGGACAAt   >  5:283269‑M2/2‑149 (MQ=255)                                                                                                                                            gCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAGGCACCGACGCCGATAATCAGTGTCAGCAGGCCAATg  <  8:24330/149‑1 (MQ=255)                                                                                                                                            |                                                                                                                                                     TCTGCGTCTGCAACCACTGCGGCAGGATCAGGTTGATACCGAAGAACCCGGCATAGCCCCCGACCAGCACAATGGTGCCAATGCGGAAGTTGCGGTGCACAAACAGGCGCAAGTTGACC‑ACCGGGTGCCGGTCGGTCAGCTCCCAGATCACGAACACCGCCAGGAACACCACCGAAATCAGGCTGCCGACAATGATGAACGACGATTCGAACCAGTCCAGATCGTTGCCCTTGTCCAGCACTACCTGCAAGGCACCGACGCCGATAATCAGGGTCAGCAGGCCAATG  >  NC_002947/4023608‑4023894

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.