| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4135852 | 56 (0.930) | 4 (0.070) | 3/246 | NT | 6.7% | coding (61/921 nt) | PP_3640 | AraC family transcriptional regulator |
| ? | NC_002947 | = 4135878 | 59 (1.050) | coding (87/921 nt) | PP_3640 | AraC family transcriptional regulator | |||||
TCCTTTGATGAGTGTCACTACAGTCTGTTGGTTATAAGAACTACCCTCCATATTCGTCAGTCGCCTTTCCTTGCTCCTGAGTCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4135699‑4135852‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgccagccGCCGCAATAGCGGCCTACATGAAACAGGCTGGCATCGAGCTCCAGGCTTTCTAATAACCAATCGACAAGCGGGCTGGACGAAATCATCTAATGCAAAGACTCAGGAGCAAGGAAAGGCGACTGACGAATATGGAGGGTAGTTCTTATA < NC_002947/4135878‑4135731 TCCTTTGATGAGTGTCACTACAGTCTGTTGGTTATAAGAACTACCCTCCATATTCGTCAGTCGCCTTTCCTTGCTCCTGAGTCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGC > 1:375141/1‑149TCCTTTGATGAGTGTCACTACAGTCTGTTGGTTATAAGAACTACCCTCCATATTCGTCAGTCGCCTTTCCTTGCTCCTGAGTCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGC > 2:251819/1‑149TCCTTTGATGAGTGTCACTACAGTCTGTTGGTTATAAGAACTACCCTCCATATTCGTCAGTCGCCTTTCCTTGCTCCTGAGTCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGC > 7:178876/1‑149 CTTTGATGAGTGTCACTACAGTCTGTTGGTTATAAGAACTACCCTCCATATTCGTCAGTCGCCTTTCCTTGCTCCTGAGTCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGC > 2:291995/1‑147 CTTTGATGAGTGTCACTACAGTCTGTTGGTTATAAGAACTACCCTCCATATTCGTCAGTCGCCTTTCCTTGCTCCTGAGTCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGC > 6:339050/1‑147 ATAAGAACTTCCCTGCATTTTCGGCCTTCGCCTTTGCTTGCTTCTGAGTCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCA < 8:180622/118‑1 ATAAGAACTACCCTCCATATTCGTCAGTCGCCTTTCCTTGCTCCTGAGTCTTTGCATAAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTATAAAGCCTGCAGCTCAATGCaa > 7:180622/1‑116 GAACTACCCTCCATTTTCGTCAGTCGCCTTTCCTTGCTCCTGAGTCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCGCCGCAATAGCGGCCTACATGAAACAGGCTGG < 4:311588/149‑1 GAACTACCCTCCATATTCGTCAGTCGCCTTTCCTTGCTCCTGAGTCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCGCCGCAATAGCGGCCTACATGAAACAGGCTGG > 3:311588/1‑149 ACTACCCTCCATATTCGTCAGTCGCCTTTCCTTGCTCCTGAGTCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCGCCGCAATAGCGGCCTACATGAAACAGGCTGGCA < 1:291995/149‑1 ACTACCCTCCATATTCGTCAGTCGCCTTTCCTTGCTCCTGAGTCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCGCCGCAATAGCGGCCTACATGAAACAGGCTGGCA < 5:303069/149‑1 TGCCAGCCGCCGCAATAGCGGCCTACATGAAACAGGCTGGCATCGAGCTCCAGGCTTTCTAATAACCAATCGACAAGCGGGCTGGACGAAATCATCTAATGCAAAGACTCAGGAGCAAGGAAAGGCGACTGACGAATATGGAGGGTAGT > 4:182788/1‑149 CAGCCGCCGCAATAGCGGCCTACATGAAACAGGCTGGCATCGAGCTCCAGGCTTTCTAATAACCAATCGACAAGCGGGCTGGACGAAATCATCGAATGCAAAGACTCAGGAGCAAGGAAAGGCGACTGACGAATATGGAGGGTAGTTCT > 8:178876/1‑149 CGCCGCAATAGCGGCCTACATGAAACAGGCTGGCATCGAGCTCCAGGCTTTCTAATAACCAATCGACAAGCGGGCTGGACGAAATCATCTAATGCAAAGACTCAGGAGCAAGGAAAGGCGACTGACGAATATGGAGGGTAGTTCTTATA < 1:129216/149‑1 TCCTTTGATGAGTGTCACTACAGTCTGTTGGTTATAAGAACTACCCTCCATATTCGTCAGTCGCCTTTCCTTGCTCCTGAGTCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4135699‑4135852‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgccagccGCCGCAATAGCGGCCTACATGAAACAGGCTGGCATCGAGCTCCAGGCTTTCTAATAACCAATCGACAAGCGGGCTGGACGAAATCATCTAATGCAAAGACTCAGGAGCAAGGAAAGGCGACTGACGAATATGGAGGGTAGTTCTTATA < NC_002947/4135878‑4135731 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |