New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4135852	56 (0.930)	4 (0.070)	3/246	NT	6.7%	coding (61/921 nt)	PP_3640	AraC family transcriptional regulator
	?	NC_002947	= 4135878	59 (1.050)					coding (87/921 nt)	PP_3640	AraC family transcriptional regulator

AGTGTCACTACAGTCTGTTGGTTATAAGAACTACCCTCCATATTCGTCAGTCGCCTTTCCTTGCTCCTGAGTCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAGGCCATTTGCCTGGAGAAAGGTGATGCCGT  >  NC_002947/4135709‑4136000                                                                                                                                                |                                                                                                                                                     aGTGTCACTACAGTCTGTTGGTTATAAGAGCTACCCTCCATATTCGTCAGTCGCCTTTCCTTGCTCCTGAGTCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGtt                                                                                                                                                  <  5:321500/148‑1 (MQ=255)        cTACAGTCTGTTGGTTATAAGAACTACCCTCCATATTCGTCAGTCGCCTTTCCTTGCTCCTGAGTCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTTTTAGAAAGCCTGGAGCTCGATGCCAGCATGTTTCATGTAg                                                                                                                                          >  8:232269/1‑149 (MQ=255)        cTACAGTCTGTTGGTTATAAGAACTACCCTCCATATTCATCAGTCGCCTTTCCTTGATCCTGAGTCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTAATGTAg                                                                                                                                          >  4:33029/1‑149 (MQ=255)         tACAGTCTGTTGGTTATAAGAACTACCCTCCATATTCGTCAGTCGCCTTTCCTTGCTCCTGAGTCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAgg                                                                                                                                         >  7:28699/1‑149 (MQ=255)         tACAGTCTGTTGGTTATAAGAACTACCCTCCATATTCGTCAGTCGCCTTTCCTTGCTCCTGAGTCTTTGCATTAGATGATTTCGTCCAGCACGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAgg                                                                                                                                         >  5:140472/1‑149 (MQ=255)                tGTTGGTTATAAGAACTACCCTCCATATTCGTCAGTCGCCTTTCCTTGCTCCTGAGTCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTAt                                                                                                                                  >  8:319468/1‑149 (MQ=255)                  ttGGTTATAAGAACTACCCTCCATATTCGTCAGTCGCCTTTCCTTGCTCCTGAGTCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTg                                                                                                                                >  5:31175/1‑149 (MQ=255)                       tataAGAACTACCCTCCATATTCGTCAGTCGCCTTTCCTTGCTCCTGAGTCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCg                                                                                                                           <  1:129216‑M2/149‑2 (MQ=255)                           aGAACTACCCTCCATATTCGTCAGTCGCCTTTCCTTGCTCCTGAGTCTTTGCATTCGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCggctg                                                                                                                       >  8:178876‑M2/1‑144 (MQ=255)                            gAACTACCCTCCATTTTCGTCAGTCGCCTTTCCTTGCTCCTGAGTCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCgccgcaatagcggcctacatgaaacaggctgg                                                                                                                      <  4:311588‑M1/149‑33 (MQ=255)                            gAACTACCCTCCATATTCGTCAGTCGCCTTTCCTTGCTCCTGAGTCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCgccgcaatagcggcctacatgaaacaggctgg                                                                                                                      >  3:311588‑M1/1‑117 (MQ=255)                              aCTACCCTCCATATTCGTCAGTCGCCTTTCCTTGCTCCTGAGTCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCgccgcaatagcggcctacatgaaacaggctggca                                                                                                                    <  1:291995‑M1/149‑35 (MQ=255)                              aCTACCCTCCATATTCGTCAGTCGCCTTTCCTTGCTCCTGAGTCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCgccgcaatagcggcctacatgaaacaggctggca                                                                                                                    <  5:303069‑M1/149‑35 (MQ=255)                              aCTACCCTCCATATTCGTCAGTCGCCTTTCCTTGCTCCTGAGTCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCggctggca                                                                                                                    >  4:182788‑M2/1‑141 (MQ=255)                                 aCCCTCCATATTCGTCAGTCGCCTTTCCTTGCTCCTGAGTCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGc                                                                                                                 >  1:213600/1‑149 (MQ=255)                                  cccTCCATAATCCTCAGTCGCCTTTCCTTGCTCCTGACTCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGc                                                                                                                 <  2:375141/148‑1 (MQ=255)                                   ccTCCATATTCGTCAGTCGCCTTTCCTTGCTCCTGAGTCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCa                                                                                                               <  2:122795/149‑1 (MQ=255)                                          atTCGTCAGTCGCCTTTCCTTGCTCCTGAGTCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTAccc                                                                                                         >  3:348006/1‑148 (MQ=255)                                          atTCGTCAGTCGCCTTTCCTTGCTCCTGAGTCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGCCCGCTATTGCGGCGGCTGGCATGCCAGTAccc                                                                                                         >  4:45511/1‑148 (MQ=255)                                              gTCAGTCGCCTTTCCTTGCTCCTGAGTCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAgg                                                                                                     >  7:52088/1‑148 (MQ=255)                                                             ttGCTCCTGAGTCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGc                                                                                     >  3:120353/1‑149 (MQ=255)                                                               gCTCCTGAGTCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCACGGGCCGGGCCAGCt                                                                                    <  7:319468/148‑1 (MQ=255)                                                                     gAGTCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCt                                                                             >  5:505/1‑149 (MQ=255)                                                                        tCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCtggt                                                                          <  1:335006/149‑1 (MQ=255)                                                                           ttGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTggtggt                                                                       >  5:168021/1‑149 (MQ=255)                                                                            tGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTggtggt                                                                       <  7:64465/148‑1 (MQ=255)                                                                               aTTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGc                                                                     >  1:363721/1‑147 (MQ=255)                                                                               aTTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGc                                                                     >  5:121955/1‑147 (MQ=255)                                                                                ttAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAg                                                                  >  4:13253/1‑149 (MQ=255)                                                                                ttAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGATGCTGGAATGCCAGTACCCAAGGCATGCGCCGGGCCAGCTTTCATCTGGTGGTGAAAg                                                                  >  7:77176/1‑149 (MQ=255)                                                                                 tAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAgg                                                                 >  4:299813/1‑149 (MQ=255)                                                                                      gatTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGGCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCAtt                                                            >  7:64141/1‑149 (MQ=255)                                                                                       atTTCGTCCAGGCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGCCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTg                                                           <  3:45511/149‑1 (MQ=255)                                                                                       atTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCAtt                                                            <  8:28699/148‑1 (MQ=255)                                                                                        tttCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCAtt                                                            >  6:70647/1‑147 (MQ=255)                                                                                        tttCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCAtt                                                            <  5:70647/147‑1 (MQ=255)                                                                                            gTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTgctggc                                                      >  2:49049/1‑149 (MQ=255)                                                                                            gTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTgctgg                                                       <  4:120353/148‑1 (MQ=255)                                                                                             tCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTgctggct                                                     >  6:211508/1‑149 (MQ=255)                                                                                                aGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGca                                                  >  8:27529/1‑149 (MQ=255)                                                                                                 gCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGca                                                  >  3:43011/1‑148 (MQ=255)                                                                                                  cccGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGcaca                                                <  7:27529/149‑1 (MQ=255)                                                                                                         gTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACg                                          <  5:59368/148‑1 (MQ=255)                                                                                                             aTTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACAt                                               >  5:243287/1‑139 (MQ=255)                                                                                                             aTTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACAt                                               <  6:243287/139‑1 (MQ=255)                                                                                                                    attaGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAgg                              >  6:283080/1‑149 (MQ=255)                                                                                                                        gAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAg                               <  2:170880/144‑1 (MQ=255)                                                                                                                        gAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAg                               >  1:170880/1‑144 (MQ=255)                                                                                                                        gAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAGGCCAt                          >  5:65998/1‑149 (MQ=255)                                                                                                                        gAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAGGCCAt                          >  6:19640/1‑149 (MQ=255)                                                                                                                          aaGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCAAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAGGCCAttt                        >  3:219805/1‑149 (MQ=255)                                                                                                                            gCCTGGAGCTCGATGCGAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAGGCCATTTGc                      <  2:363721/149‑1 (MQ=255)                                                                                                                              cTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAGGCCATTTGCCt                    <  3:299813/149‑1 (MQ=255)                                                                                                                                 gAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAGGCCATTTGCCTgg                  <  5:339050/148‑1 (MQ=255)                                                                                                                                 gAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAGGCCATTTGCCTGga                 <  6:140472/149‑1 (MQ=255)                                                                                                                                 gAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAGGCCATTTGCCTGga                 <  5:283080/149‑1 (MQ=255)                                                                                                                                 gAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAGGCCATTTGCCTGga                 <  1:49049/149‑1 (MQ=255)                                                                                                                                 gAGCTCGAAGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCGAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAGGCCATTTGCCTg                   <  3:33029/147‑1 (MQ=255)                                                                                                                                  aGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAGGCCATTTGCCTGga                 <  6:121955/148‑1 (MQ=255)                                                                                                                                     tCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAGGCCATTTGCCTg                   >  2:38045/1‑143 (MQ=255)                                                                                                                                     tCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAGGCCATTTGCCTg                   <  1:38045/143‑1 (MQ=255)                                                                                                                                       gATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAGGCCATTTGCCTGGAGAAAgg           >  2:125574/1‑149 (MQ=255)                                                                                                                                         tGCCAGCCgccgcaatagcggcctacatgaaacaggctggcatcgagctccaggctttctaataaccaatcgacaagcgggctggacgaaatcatctaatgcaaagactcaggagcaaggaaaggcgactgacgaatatggagggtagt         >  4:182788‑M1/1‑8 (MQ=255)                                                                                                                                         tGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCggctggcatcgagctccaggctttctaataaccaatcgacaagcgggctggacgaaatcatctaatgcaaagactcaggagcaaggaaaggcgactgacgaatatggagggtagt         <  1:291995‑M2/149‑116 (MQ=255)                                                                                                                                         tGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCggctggcatcgagctccaggctttctaataaccaatcgacaagcgggctggacgaaatcatctaatgcaaagactcaggagcaaggaaaggcgactgacgaatatggagggtagt         <  5:303069‑M2/149‑116 (MQ=255)                                                                                                                                         tGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAGGCCATTTGCCTGGAGAAAGGt          <  6:505/148‑1 (MQ=255)                                                                                                                                          atctgCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAGGCCATTTGCCTGGAGAAAGGt          <  5:279140/143‑1 (MQ=255)                                                                                                                                           ccAGCCTGTTTCATGTAGGCCGCTATTGCGGCggctggcatcgagctccaggctttctaataaccaatcgacaagcgggctggacgaaatcatctaatgcaaagactcaggagcaaggaaaggcgactgacgaatatggagggtagttc       >  3:311588‑M2/1‑32 (MQ=255)                                                                                                                                           ccAGCCTGTTTCATGTAGGCCGCTATTGCGGCggctggcatcgagctccaggctttctaataaccaatcgacaagcgggctggacgaaatcatctaatgcaaagactcaggagcaaggaaaggcgactgacgaaaatggagggtagttc       <  4:311588‑M2/149‑118 (MQ=255)                                                                                                                                           ccAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAGGCCATTTGCCTGGAGAAAGGTGa        <  5:19640/148‑1 (MQ=255)                                                                                                                                            cAGCCgccgcaatagcggcctacatgaaacaggctggcatcgagctccaggctttctaataaccaatcgacaagcgggctggacgaaatcatcgaatgcaaagactcaggagcaaggaaaggcgactgacgaatatggagggtagttct      >  8:178876‑M1/1‑5 (MQ=255)                                                                                                                                             aGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAGGCCATTTGCCTGGAGAAAGGTGATGc     >  5:248770/1‑149 (MQ=255)                                                                                                                                               ccTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAGGCCATTTGCCTGGAGAAAGGt          >  6:279140/1‑142 (MQ=255)                                                                                                                                                cgccgcaatagcggcctacatgaaacaggctggcatcgagctccaggctttctaataaccaatcgacaagcgggctggacgaaatcatctaatgcaaagactcaggagcaaggaaaggcgactgacgaatatggagggtagttcttata  <  1:129216‑M1/149‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                     AGTGTCACTACAGTCTGTTGGTTATAAGAACTACCCTCCATATTCGTCAGTCGCCTTTCCTTGCTCCTGAGTCTTTGCATTAGATGATTTCGTCCAGCCCGCTTGTCGATTGGTTATTAGAAAGCCTGGAGCTCGATGCCAGCCTGTTTCATGTAGGCCGCTATTGCGGCGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAGGCCATTTGCCTGGAGAAAGGTGATGCCGT  >  NC_002947/4135709‑4136000

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.