| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4218416 | 39 (0.650) | 4 (0.070) | 4/250 | NT | 10.4% | coding (881/1500 nt) | PP_3698 | hypothetical protein |
| ? | NC_002947 | = 4218439 | 32 (0.560) | coding (858/1500 nt) | PP_3698 | hypothetical protein | |||||
CTGCCAATTGATCCTTAATGCCAAGCTCAAAAACTCATTGAGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGAAGCAGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4218262‑4218416‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcagacCGAGCTTCTGCGATTGGTGCCTCGTCTGCTTCAGGAGTCAGCCGCCGTATTACGTGCGCGGGCCAGAAGCGAGCGGGACGTCAAGAGCTTCTTGAAAACTGGCCTAGTCGCTGAGCATCACCGTGTGGGTCACCTGCTCAATGAG < NC_002947/4218439‑4218295 CTGCCAATTGATCCTTAATGCCAAGCTCAAAAACTCATTGAGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGAA < 6:199003/149‑1CTGCCAATTGATCCTTAATGCCAACCTCAAAAACTCATTGAGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGAA < 8:266870/149‑1 AATTGATCCTTAATGCCAAGCTCAAAAACTCATTGAGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGAAGCAGA > 7:117249/1‑149 AATTGATCCTTAATGCCAAGCTCAAAAACTCATTGAGCAGGTGACCCACACGGAGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTAGACGTCACGCTCGCTTCTGGCCCGAGCACGTAATAAGGCGGCTGACTCCTGAAGCAGA > 2:293111/1‑149 TTGAGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGAAGCAGACCGAGCTTCTGCGATTGGTGCCTCGTCTGCTT > 6:163938/1‑149 AGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGAAGCAGACCGAGCTTCTGCGATTGGTGCCTCGTCTGCTTCAG < 5:163938/149‑1 GACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGAAGCAGACCGAGCTTCTGCGATTGGTGCCTCGTCTGCTTCA > 3:84416/1‑119 GACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGAAGCAGACCGAGCTTCTGCGATTGGTGCCTCGTCTGCTTCA < 4:84416/119‑1 ACCGAGCTTCTGCGATTGGTGCCTCGTCTGCTTCAGGAGTCAGCCGCCGTATTACGTGCGCGGGCCAGAAGCGAGCGGGACGTCAAGAGCTTCTTGAAAACTGGCCTAGTCGCTGAGCATCACCGTGTGGGTCACCTGCTCAATGAG > 5:269498/1‑147 ACCGAGCTTCTGCGATTGGTGCCTCGTCTGCTTCAGGAGTCAGCCGCCGTATTACGTGCGCGGGCCAGAAGCGAGCGGGACGTCAAGAGCTTCTTGAAAACTGGCCTAGTCGCTGAGCATCACCGTGTGGGTCACCTGCTCAATGAG < 6:269498/147‑1 CTGCCAATTGATCCTTAATGCCAAGCTCAAAAACTCATTGAGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGAAGCAGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4218262‑4218416‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcagacCGAGCTTCTGCGATTGGTGCCTCGTCTGCTTCAGGAGTCAGCCGCCGTATTACGTGCGCGGGCCAGAAGCGAGCGGGACGTCAAGAGCTTCTTGAAAACTGGCCTAGTCGCTGAGCATCACCGTGTGGGTCACCTGCTCAATGAG < NC_002947/4218439‑4218295 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |