New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4218416	39 (0.650)	4 (0.070)	4/250	NT	10.4%	coding (881/1500 nt)	PP_3698	hypothetical protein
	?	NC_002947	= 4218439	32 (0.560)					coding (858/1500 nt)	PP_3698	hypothetical protein

AAAACTCATTGAGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAGTTCTACAGGCGCCCGCAGTTGAAGCTGGAAGCTGTCAAAGACCTTCCCTTCTGGCGTTGTCAGCAGC  >  NC_002947/4218291‑4218586                                                                                                                                                        |                                                                                                                                                      aaaaCTCATTGAGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCg                                                                                                                                                       <  3:299183/149‑1 (MQ=255)     cTCATTGAGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGgt                                                                                                                                                     <  6:269498‑M2/147‑3 (MQ=255)     cTCATTGAGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGgt                                                                                                                                                     >  5:269498‑M2/1‑145 (MQ=255)           gAGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGa                                                                                                                                              <  1:5384/148‑1 (MQ=255)            aGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGata                                                                                                                                            >  4:10469/1‑149 (MQ=255)            aGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGat                                                                                                                                             <  3:326368/148‑1 (MQ=255)             gCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGata‑t                                                                                                                                          <  6:332777/149‑1 (MQ=255)               aGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGACA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑ttt                                                                                                                                        <  4:85360/149‑1 (MQ=255)                ggTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTtg                                                                                                                                       <  2:293630/149‑1 (MQ=255)                 gTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGAGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTtg‑t                                                                                                                                     >  6:376625/1‑149 (MQ=255)                     cccACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGACAGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCa                                                                                                                                  <  1:278193/149‑1 (MQ=255)                       cacaCGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTg                                                                                                                               >  4:107311/1‑149 (MQ=255)                                 tGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTAc                                                                                                                     <  6:92683/149‑1 (MQ=255)                                    tCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGc                                                                                                                  >  2:234573/1‑149 (MQ=255)                                          acaaGGCCCCTTTTCAACAACCTCTTGACGTCCCCCTCGCGTCTGGCCCGCGCACCGAAAACGGCGGCTGACACCCCA‑ACCAGACGCTGCCACCCAATCACAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGa                                                                                                              <  1:293658/146‑1 (MQ=255)                                           cTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGa                                                                                                           <  1:234573/149‑1 (MQ=255)                                                ccAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCat                                                                                                      >  1:308095/1‑149 (MQ=255)                                                                    gACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTtc                                                                                  >  7:109415/1‑149 (MQ=255)                                                                        tCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCAt                                                                              <  8:117249/149‑1 (MQ=255)                                                                        tCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCAt                                                                              <  2:308095/149‑1 (MQ=255)                                                                          ccGCTCGCTTCTGGCCCGCGCACGTAATAGGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTGCTGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCAt                                                                              <  1:293111/148‑1 (MQ=255)                                                                           cgctcgctTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCAt                                                                              >  3:215669/1‑146 (MQ=255)                                                                                 ctTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAg                                                                     <  8:332841/149‑1 (MQ=255)                                                                                 ctTCTCGCCCTCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAg                                                                     <  6:84998/149‑1 (MQ=255)                                                                                  ttCTGGCCCGCGCACGTAATACAGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGCTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAGt                                                                    >  8:185676/1‑149 (MQ=255)                                                                                         ccGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAGTTCTACAg                                                             >  4:201333/1‑149 (MQ=255)                                                                                             gcACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAGTTCTACAGgcgc                                                         >  1:192844/1‑149 (MQ=255)                                                                                                        ggcggcTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAGTTCTACAGGCGCCCGCAGTTg                                                >  4:269668/1‑147 (MQ=255)                                                                                                             cTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGTAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAGTTCTACAGGCGCCCGCAGTTgaagctgg                                         <  3:357483/149‑1 (MQ=255)                                                                                                               gACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAGTTCTACAGGCGCCCGCAGTTgaagctgg                                         >  3:320990/1‑147 (MQ=255)                                                                                                                aCTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAGTTCTACAGGCGCCCGCAGTTgaagctggaa                                       <  8:109415/148‑1 (MQ=255)                                                                                                                aCTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAGTTCTACAGGCGCCCGCAGTTgaagctgga                                        <  3:269668/147‑1 (MQ=255)                                                                                                                    cTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGgtctgcttcaggagtcagccgccgtattacgtgcgcgggccagaagcgagcgggacgtcaagagcttcttgaaaactggcctagtcgctgagcatcaccgtgtgggtcacctgct                                    <  5:163938‑M2/149‑116 (MQ=255)                                                                                                                    cTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATATTTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAGTTCTACAGGCGCCCGCAGTTgaagctggaagctg                                   >  2:176857/1‑149 (MQ=255)                                                                                                                    cTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAGTTCTACAGGCGCCCGCAGTTGAAGCTGGAAGCTGt                                  <  3:201333/149‑1 (MQ=255)                                                                                                                     tGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGgtctgcttcaggagtcagccgccgtattacgtgcgcgggccagaagcgagcgggacgtcaagagcttcttgaaaactggcctagtc                                                                 <  4:84416‑M2/119‑87 (MQ=255)                                                                                                                     tGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGgtctgcttcaggagtcagccgccgtattacgtgcgcgggccagaagcgagcgggacgtcaagagcttcttgaaaactggcctagtc                                                                 >  3:84416‑M2/1‑33 (MQ=255)                                                                                                                     tGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAGTTCTACAGGCGCCCGCAGTTGAAGCTGGAAGCTGt                                  >  1:68261/1‑148 (MQ=255)                                                                                                                     tGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAGTTCTACAGGCGCCCGCAGTTGAAGCTGGAAGCTGt                                  >  6:286028/1‑148 (MQ=255)                                                                                                                       a‑aGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGgtctgcttcaggagtcagccgccgtattacgtgcgcgggccagaagcgagcgggacgtcaagagcttcttgaaaactggcctagtcgctgagcatcaccgtgtgggtcacctgctcaa                                 >  6:163938‑M2/1‑31 (MQ=255)                                                                                                                                    gCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAGTTCTACAGGCGCCCGCAGTTGAAGCTGGAAGCTGTCAAAGAccttccct                    >  7:26330/1‑149 (MQ=255)                                                                                                                                        ccAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAGTTCTACAGGCGCCCGCAGTTGAAGCTGGAAGCTGTCAAAGACCTTCCCTTCt                 <  3:107311/149‑1 (MQ=255)                                                                                                                                               cAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAGTTCTACAGGCGCCCGCAGTTGAAGCTGGAAGCTGTCAAAGACCTTCCCTTCTGGCGTTg          >  6:102598/1‑149 (MQ=255)                                                                                                                                                    gCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAGTTCTACAGGCGCCCGCAGTTGAAGCTGGAAGCTGTCAAAGACCTTCCCTTCTGGCGTTGTcag      >  7:190486/1‑148 (MQ=255)                                                                                                                                                        ggTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAGTTCTACAGGCGCCCGCAGTTGAAGCTGGAAGCTGTCAAAGACCTTCCCTTCTGGCGTTGTCagcagc  <  8:26330/148‑1 (MQ=255)                                                                                                                                                        |                                                                                                                                                      AAAACTCATTGAGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAGTTCTACAGGCGCCCGCAGTTGAAGCTGGAAGCTGTCAAAGACCTTCCCTTCTGGCGTTGTCAGCAGC  >  NC_002947/4218291‑4218586

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.