New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4218416	39 (0.650)	4 (0.070)	4/250	NT	10.4%	coding (881/1500 nt)	PP_3698	hypothetical protein
	?	NC_002947	= 4218439	32 (0.560)					coding (858/1500 nt)	PP_3698	hypothetical protein

GATCCTTAATGCCAAGCTCAAAAACTCATTGAGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAGTTCTACAGGCGCCCGCAGTTGAAGCTGGAAGCTGTCAA  >  NC_002947/4218271‑4218557                                                                                                                                                   |                                                                                                                                                  gATCCTTAATGCCAAGCTCAAAAACTCATTGAGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑a                                                                                                                                                <  1:109816/148‑1 (MQ=255) gATCCTTAATGCCAAGCTCAAAAACTCATTGAGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑a                                                                                                                                                <  3:183077/148‑1 (MQ=255)  aTCCTTAATGCCAAGCTCAAAAACTCATTGAGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGTCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑atg                                                                                                                                              <  2:205250/149‑3 (MQ=255)   tCCTTAATGCCAAGCTCAAAAACTCATTGAGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑Agg                                                                                                                                              <  5:58571/148‑1 (MQ=255)     cTTAATGCCAAGCTCAAAAACTCATTGAGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGccc                                                                                                                                           >  2:278193/1‑147 (MQ=255)     cTTAATGCCAAGCTCAAAAACTCATTGAGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCa                                                                                                                                            <  7:44797/148‑1 (MQ=255)             cAAGCTCAAAAACACATTGAGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCg                                                                                                                                    >  4:357483/1‑147 (MQ=255)              aaGCTCAAAAACTCATTGAGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGACA‑CCAATCg                                                                                                                                    >  3:85360/1‑146 (MQ=255)                  tCAAAGACTCATTGAGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTATCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGc                                                                                                                             >  1:293630/1‑149 (MQ=255)                  tCAAAAACTCATTGAGCAGGTGACCCACACGGAGATGCTCAGCGACTAGGCCAGTTTTCAAGCAGCTCATGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAg                                                                                                                              >  4:297564/1‑148 (MQ=255)                     aaaaCTCATTGAGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCg                                                                                                                          <  3:299183/149‑1 (MQ=255)                         cTCATTGAGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGgt                                                                                                                        >  5:269498‑M2/1‑145 (MQ=255)                         cTCATTGAGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGgt                                                                                                                        <  6:269498‑M2/147‑3 (MQ=255)                             ttGAGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACcgagcttctgcgattggtgcctcgtctgctt                                                                                                                    >  6:163938‑M1/1‑118 (MQ=255)                               gAGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGa                                                                                                                 <  1:5384/148‑1 (MQ=255)                                aGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACcgagcttctgcgattggtgcctcgtctgcttcag                                                                                                                 <  5:163938‑M1/149‑35 (MQ=255)                                aGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGata                                                                                                               >  4:10469/1‑149 (MQ=255)                                aGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGat                                                                                                                <  3:326368/148‑1 (MQ=255)                                 gCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGata‑t                                                                                                             <  6:332777/149‑1 (MQ=255)                                   aGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGACA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑ttt                                                                                                           <  4:85360/149‑1 (MQ=255)                                    ggTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTtg                                                                                                          <  2:293630/149‑1 (MQ=255)                                     gTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGAGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTtg‑t                                                                                                        >  6:376625/1‑149 (MQ=255)                                         cccACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGACAGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCa                                                                                                     <  1:278193/149‑1 (MQ=255)                                           cacaCGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTg                                                                                                  >  4:107311/1‑149 (MQ=255)                                                     tGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTAc                                                                                        <  6:92683/149‑1 (MQ=255)                                                        tCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGc                                                                                     >  2:234573/1‑149 (MQ=255)                                                             gACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACcgagcttctgcgattggtgcctcgtctgcttca                                                                                                                  >  3:84416‑M1/1‑86 (MQ=255)                                                             gACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACcgagcttctgcgattggtgcctcgtctgcttca                                                                                                                  <  4:84416‑M1/119‑34 (MQ=255)                                                              acaaGGCCCCTTTTCAACAACCTCTTGACGTCCCCCTCGCGTCTGGCCCGCGCACCGAAAACGGCGGCTGACACCCCA‑ACCAGACGCTGCCACCCAATCACAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGa                                                                                 <  1:293658/146‑1 (MQ=255)                                                               cTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGa                                                                              <  1:234573/149‑1 (MQ=255)                                                                    ccAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCat                                                                         >  1:308095/1‑149 (MQ=255)                                                                                        gACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTtc                                                     >  7:109415/1‑149 (MQ=255)                                                                                            tCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCAt                                                 <  8:117249/149‑1 (MQ=255)                                                                                            tCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCAt                                                 <  2:308095/149‑1 (MQ=255)                                                                                              ccGCTCGCTTCTGGCCCGCGCACGTAATAGGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTGCTGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCAt                                                 <  1:293111/148‑1 (MQ=255)                                                                                               cgctcgctTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCAt                                                 >  3:215669/1‑146 (MQ=255)                                                                                                     ctTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAg                                        <  8:332841/149‑1 (MQ=255)                                                                                                     ctTCTCGCCCTCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAg                                        <  6:84998/149‑1 (MQ=255)                                                                                                      ttCTGGCCCGCGCACGTAATACAGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGCTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAGt                                       >  8:185676/1‑149 (MQ=255)                                                                                                             ccGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAGTTCTACAg                                >  4:201333/1‑149 (MQ=255)                                                                                                                 gcACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAGTTCTACAGgcgc                            >  1:192844/1‑149 (MQ=255)                                                                                                                            ggcggcTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAGTTCTACAGGCGCCCGCAGTTg                   >  4:269668/1‑147 (MQ=255)                                                                                                                                 cTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGTAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAGTTCTACAGGCGCCCGCAGTTgaagctgg            <  3:357483/149‑1 (MQ=255)                                                                                                                                   gACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAGTTCTACAGGCGCCCGCAGTTgaagctgg            >  3:320990/1‑147 (MQ=255)                                                                                                                                    aCTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAGTTCTACAGGCGCCCGCAGTTgaagctggaa          <  8:109415/148‑1 (MQ=255)                                                                                                                                    aCTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAGTTCTACAGGCGCCCGCAGTTgaagctgga           <  3:269668/147‑1 (MQ=255)                                                                                                                                        cTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGgtctgcttcaggagtcagccgccgtattacgtgcgcgggccagaagcgagcgggacgtcaagagcttcttgaaaactggcctagtcgctgagcatcaccgtgtgggtcacctgct       <  5:163938‑M2/149‑116 (MQ=255)                                                                                                                                        cTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATATTTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAGTTCTACAGGCGCCCGCAGTTgaagctggaagctg      >  2:176857/1‑149 (MQ=255)                                                                                                                                        cTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAGTTCTACAGGCGCCCGCAGTTGAAGCTGGAAGCTGt     <  3:201333/149‑1 (MQ=255)                                                                                                                                         tGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGgtctgcttcaggagtcagccgccgtattacgtgcgcgggccagaagcgagcgggacgtcaagagcttcttgaaaactggcctagtc                                    >  3:84416‑M2/1‑33 (MQ=255)                                                                                                                                         tGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGgtctgcttcaggagtcagccgccgtattacgtgcgcgggccagaagcgagcgggacgtcaagagcttcttgaaaactggcctagtc                                    <  4:84416‑M2/119‑87 (MQ=255)                                                                                                                                         tGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAGTTCTACAGGCGCCCGCAGTTGAAGCTGGAAGCTGt     >  6:286028/1‑148 (MQ=255)                                                                                                                                         tGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAGTTCTACAGGCGCCCGCAGTTGAAGCTGGAAGCTGt     >  1:68261/1‑148 (MQ=255)                                                                                                                                           a‑aGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGgtctgcttcaggagtcagccgccgtattacgtgcgcgggccagaagcgagcgggacgtcaagagcttcttgaaaactggcctagtcgctgagcatcaccgtgtgggtcacctgctcaa    >  6:163938‑M2/1‑31 (MQ=255)                                                                                                                                                  aCcgagcttctgcgattggtgcctcgtctgcttcaggagtcagccgccgtattacgtgcgcgggccagaagcgagcgggacgtcaagagcttcttgaaaactggcctagtcgctgagcatcaccgtgtgggtcacctgctcaatgag  <  6:269498‑M1/147‑146 (MQ=255)                                                                                                                                                  aCcgagcttctgcgattggtgcctcgtctgcttcaggagtcagccgccgtattacgtgcgcgggccagaagcgagcgggacgtcaagagcttcttgaaaactggcctagtcgctgagcatcaccgtgtgggtcacctgctcaatgag  >  5:269498‑M1/1‑2 (MQ=255)                                                                                                                                                   |                                                                                                                                                  GATCCTTAATGCCAAGCTCAAAAACTCATTGAGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTTGACGTCCCGCTCGCTTCTGGCCCGCGCACGTAATACGGCGGCTGACTCCTGA‑AGCAGACG‑AGGCA‑CCAATCGCAGAAGCTCGGTCTGCTGATA‑TTTG‑TGCAGTGCCTGCGGTACGGCTGGATGACGCATGATGTTGCGTATCCGCGTTCTCATTAGATCAAGTTCTACAGGCGCCCGCAGTTGAAGCTGGAAGCTGTCAA  >  NC_002947/4218271‑4218557

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.