New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4679619	39 (0.650)	4 (0.070)	4/248	NT	9.3%	coding (338/447 nt)	rnhA	ribonuclease H
	?	NC_002947	= 4679643	41 (0.720)					coding (314/447 nt)	rnhA	ribonuclease H

TCCAACTTGCATCCGTTACAAAGGCCGCGATTGTACCCCAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTG‑CCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4679468‑4679619 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttgtggcAGCAGCTCGATGAGCAGGTCAACCGCCACAAGGTAACCTGGAAGTGGGTGCGCGGCCATATTGGCCACCCCGGCAACGAACGCGCCGACCAGCTGGCCAACCGTGGGGTCGATGAGGTGCGCGCCCAGCGTTGAGCTGGGGTACAAT  <  NC_002947/4679643‑4679497                                                                                                                                                                                                                                                                                                              TCCAACTTGCATCCGTTACAAAGGCCGCGATTGTACCCCAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTG‑CCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGT                                                                                                                                                        >  3:231469/1‑149   CAACTTGCATCCGTTACAAAGGCCGCGATTGTACCCCAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTG‑CCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGT                                                                                                                                                        <  2:91563/147‑1    AACTTGCAGCCGTTACAAAGGCCGCGATTGTACCCCAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGG                                                                                                                                                      <  1:88731/149‑1              CGTTACAAAGGCCGCGATTGTACCCCAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTG‑CCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCAGCAGCTCGA                                                                                                                                           >  7:8545/1‑149                                    CCCCAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTG‑CCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCAGCAGCTCGATGAGCAGGTCAACCGCCACAAG                                                                                                                     <  8:332434/149‑1                                    CCCCAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTG‑CCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCAGCAGCTCGATGAGCAGGTCAACCGCCACAA                                                                                                                      <  8:8545/148‑1                                          CTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTG‑CCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCAGCAGCTCGATGAGCAGGTCAACCGCCACAAGGTAACC                                                                                                               <  4:231469/149‑1                                                                                                                                                  CTTGTGGCAGCAGCTCGATGAGCAGGTCAACCGCCACAAGGTAACCTGGAAGTGGGTGCGCGGCCATATTGGCCACCCCGGCAACGAACGCGCCGACCAGCTGGCCAACCGTGGGGTCGATGAGGTGCGCGCCCAGCGTTGAGCTGGGG        <  5:267584/149‑1                                                                                                                                                     GTGGCAGCAGCTCGATGAGCAGGACAACCGCCACAAGGTAACCTGGAAGTGGGTGCGCGGCCATATTGGCCACCCCGGCAACGAACGCGCCGACCAGCTGGCCAACCGTGGGGTCGATGAGGTGCGCGCCCAGCGTTGAGCTGGcgc       <  6:117854/147‑4                                                                                                                                                        GCAGCAGCTCGATGAGCAGGTCAACCGCCACAAGGTAACCTGGAAGTGGGTGCGCGGCCATATTGGCCACCCCGGCAACGAACGCGCCGACCAGCTGGCCAACCGTGGGGTCGATGAGGTGCGCGCCCAGCGTTGAGCTGGGGTACAAT  >  1:130185/1‑149                                                                                                                                                                                                                                                                                                              TCCAACTTGCATCCGTTACAAAGGCCGCGATTGTACCCCAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTG‑CCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4679468‑4679619 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttgtggcAGCAGCTCGATGAGCAGGTCAACCGCCACAAGGTAACCTGGAAGTGGGTGCGCGGCCATATTGGCCACCCCGGCAACGAACGCGCCGACCAGCTGGCCAACCGTGGGGTCGATGAGGTGCGCGCCCAGCGTTGAGCTGGGGTACAAT  <  NC_002947/4679643‑4679497

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.